#include <paralleltetmesh.h>
Inheritance diagram for mesh::ParallelTetMesh:
Definition at line 26 of file paralleltetmesh.h.
| mesh::ParallelTetMesh::ParallelTetMesh | ( | MPI_Comm | _comm | ) |
Default constructor
Definition at line 22 of file paralleltetmesh.cpp.
References _comm, _mpi_rank, _mpi_size, _point_counter, and _tet_counter.
| mesh::ParallelTetMesh::~ParallelTetMesh | ( | ) | [virtual] |
Destructor
Definition at line 33 of file paralleltetmesh.cpp.
Return global ID of local edge.
| lid | local ID of edge |
Definition at line 453 of file paralleltetmesh.cpp.
References _edge_gids.
Referenced by NedelecMesh::gdof(), LagrangeMesh::gdof(), NedelecMesh::generate_sorted_AM(), set_edge_gids(), and NedelecMesh::set_map().
Return global ID of local face.
| lid | local ID of face |
Definition at line 449 of file paralleltetmesh.cpp.
References _face_gids.
Referenced by NedelecMesh::gdof(), and set_face_gids().
| void mesh::ParallelTetMesh::finalize_mesh | ( | int | nofSym | ) | [virtual] |
Finalize and validate the mesh data structures. Call synchronize method to get a coherent global numbering of faces and edges.
| nofSym | number of symmetry planes in the mesh |
Reimplemented from mesh::TetMesh.
Definition at line 102 of file paralleltetmesh.cpp.
References mesh::TetMesh::finalize_mesh(), and synchronize().
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| void mesh::ParallelTetMesh::fix_edge_orientation | ( | ) |
Make edge orientation consisten across all processors using point gids.
Definition at line 85 of file paralleltetmesh.cpp.
References point_gid(), rWarningAll, mesh::TetMesh::tet_begin(), and mesh::TetMesh::tet_end().
Referenced by synchronize().
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| MPI_Comm mesh::ParallelTetMesh::get_comm | ( | ) |
Return MPI Communicator
Definition at line 499 of file paralleltetmesh.cpp.
References _comm.
Referenced by NedelecMesh::generate_sorted_AM(), NedelecMesh::set_map(), and LagrangeMesh::set_map().
| id_t mesh::ParallelTetMesh::get_dof_removed_offset | ( | ) |
Return number of A matrix rows removed due to linear dependencies.
| std::runtime_error | if dof_removed_offset has not yet been calculated. |
Calculate and return number of A matrix rows removed due to linear dependencies.
| my_offset | number of removed matrix rows locally. |
| std::runtime_error | if dof_removed_offset has already been calculated. |
| std::pair< id_t, id_t > mesh::ParallelTetMesh::get_edge_corner_gids | ( | const Edge & | edge | ) | const [private] |
Get global corner ids of an edge.
| face | Reference to edge. |
Definition at line 135 of file paralleltetmesh.cpp.
References mesh::Edge::get_end_id(), mesh::Edge::get_start_id(), and point_gid().
Referenced by set_edge_gids().
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| const std::vector<id_t>& mesh::ParallelTetMesh::get_edge_gids | ( | ) | const [inline] |
Definition at line 148 of file paralleltetmesh.h.
References _edge_gids.
Referenced by NedelecMesh::set_map().
| utility::triple< id_t, id_t, id_t > mesh::ParallelTetMesh::get_face_corner_gids | ( | const Face & | face | ) | const [private] |
Get global corner ids of a face.
| face | Reference to face. |
Definition at line 122 of file paralleltetmesh.cpp.
References mesh::Face::get_corner_id(), and point_gid().
Referenced by set_face_gids().
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| const std::vector<id_t>& mesh::ParallelTetMesh::get_node_gids | ( | ) | const [inline] |
Definition at line 152 of file paralleltetmesh.h.
References _point_gids.
Referenced by LagrangeMesh::set_map().
| id_t mesh::ParallelTetMesh::get_num_global_edges | ( | ) | const [inline] |
Return number of global edges.
Definition at line 118 of file paralleltetmesh.h.
References _num_global_edges.
Referenced by LagrangeMesh::LagrangeMesh(), and NedelecMesh::NedelecMesh().
| id_t mesh::ParallelTetMesh::get_num_global_faces | ( | ) | const [inline] |
Return number of global faces.
Definition at line 125 of file paralleltetmesh.h.
References _num_global_faces.
Referenced by NedelecMesh::NedelecMesh().
| id_t mesh::ParallelTetMesh::get_num_global_points | ( | ) | const [inline] |
Return number of global nodes.
Definition at line 111 of file paralleltetmesh.h.
References _num_global_points.
Referenced by LagrangeMesh::gdof(), h5_write_eigenpoint(), and LagrangeMesh::LagrangeMesh().
| id_t mesh::ParallelTetMesh::get_num_global_tets | ( | ) |
Return number of global tets; this is equivalen to get_nof_tets in the serial case, i.e. when there is only one single process operating on the mesh.
standard loop indices
local number of tetrahdra
global number of tetrahedra
Carry out an MPI reduce operation to compute the global number of tetrahedra employed in the mesh based on the sum of the process local number of tetrahedra.
Definition at line 463 of file paralleltetmesh.cpp.
References _comm, and mesh::TetMesh::get_nof_tets().
Referenced by h5_write_eigenfield(), and h5_write_eigenmesh().
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| void mesh::ParallelTetMesh::initPoint | ( | int | nofPoint | ) | [virtual] |
Reserve space for nofPoint points and initialize lookup table array
Reimplemented from mesh::TetMesh.
Definition at line 36 of file paralleltetmesh.cpp.
References _point_counter, _point_gids, and mesh::TetMesh::initPoint().
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| void mesh::ParallelTetMesh::initTet | ( | int | nofTet | ) | [virtual] |
Reserve space for nofTet tets and initialize tet lookup table array
Reimplemented from mesh::TetMesh.
Definition at line 42 of file paralleltetmesh.cpp.
References _tet_counter, and mesh::TetMesh::initTet().
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| void mesh::ParallelTetMesh::insertPoint | ( | int | id, | |
| double | x, | |||
| double | y, | |||
| double | z | |||
| ) | [virtual] |
Add a new point node to the mesh
| id | global ID of node | |
| x | x coordinate of node | |
| y | y coordinate of node | |
| z | z coordinate of node |
Reimplemented from mesh::TetMesh.
Definition at line 51 of file paralleltetmesh.cpp.
References _point_counter, _point_gids, _point_local_id, and mesh::TetMesh::insertPoint().
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| void mesh::ParallelTetMesh::insertTet | ( | id_t | global_id, | |
| id_t | id0, | |||
| id_t | id1, | |||
| id_t | id2, | |||
| id_t | id3, | |||
| id_t | material | |||
| ) | [virtual] |
Inserts a new Tet into the TetMesh. Tet ids are assigned in consecutive order. Global ID's are stored in lookup table array
| global_id | global id of Tet | |
| id0 | id of the corner 0 | |
| id1 | id of the corner 1 | |
| id2 | id of the corner 2 | |
| id3 | id of the corner 3 |
Reimplemented from mesh::TetMesh.
Definition at line 60 of file paralleltetmesh.cpp.
References _point_local_id, _tet_counter, and mesh::TetMesh::insertTet().
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| bool mesh::ParallelTetMesh::is_owned_edge | ( | id_t | gid | ) | const |
Return true if global edge gid is owned by calling processor.
Definition at line 489 of file paralleltetmesh.cpp.
References _my_edges.
Referenced by NedelecMesh::generate_sorted_AM(), NedelecMesh::is_owned_gdof(), and LagrangeMesh::is_owned_gdof().
| bool mesh::ParallelTetMesh::is_owned_face | ( | id_t | gid | ) | const |
Return true if global face gid is owned by calling processor.
Definition at line 494 of file paralleltetmesh.cpp.
References _my_faces.
Referenced by NedelecMesh::is_owned_gdof().
| bool mesh::ParallelTetMesh::is_owned_point | ( | id_t | gid | ) | const |
Return true if global point gid is owned by calling processor.
Definition at line 481 of file paralleltetmesh.cpp.
References _point_local_id, and _point_owned_by_me.
Referenced by LagrangeMesh::is_owned_gdof(), and set_edge_gids().
Return local ID of face connecting by node0, node1 and node2. A runtime_error is thrown if the face does not exist.
This function is called from TetmeshBuilder::set_bc().
| node0 | global ID of node 0 | |
| node1 | global ID of node 1 | |
| node2 | global ID of node 2 |
Reimplemented from mesh::TetMesh.
Definition at line 67 of file paralleltetmesh.cpp.
References _point_local_id, and mesh::TetMesh::lookupFace().
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Return global ID of local node.
| lid | local ID of node |
Definition at line 457 of file paralleltetmesh.cpp.
References _point_gids.
Referenced by fix_edge_orientation(), LagrangeMesh::gdof(), NedelecMesh::generate_sorted_AM(), get_edge_corner_gids(), get_face_corner_gids(), h5_write_eigenmesh(), h5_write_eigenpoint(), NedelecMesh::set_map(), LagrangeMesh::set_map(), and set_point_ownership().
| void mesh::ParallelTetMesh::set_edge_gids | ( | ) | [private] |
Assign global ids to faces.
Definition at line 233 of file paralleltetmesh.cpp.
References _comm, _edge_gids, _mpi_rank, _my_edges, _num_global_edges, parallel::assign_gids(), parallel::compute_mgid_map(), mesh::TetMesh::edge_begin(), mesh::TetMesh::edge_end(), edge_gid(), mesh::TetMesh::face_begin(), mesh::TetMesh::face_end(), get_edge_corner_gids(), mesh::TetMesh::get_nof_edges(), mesh::ID_NONE, is_owned_point(), rDebugAll, rInfoAll, rWarningAll, and parallel::set_counts_displs().
Referenced by synchronize().
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| void mesh::ParallelTetMesh::set_face_gids | ( | ) | [private] |
Assign global ids to faces.
Definition at line 143 of file paralleltetmesh.cpp.
References _comm, _face_gids, _mpi_rank, _my_faces, _num_global_faces, parallel::assign_gids(), parallel::compute_mgid_map(), mesh::TetMesh::face_begin(), mesh::TetMesh::face_end(), face_gid(), get_face_corner_gids(), mesh::TetMesh::get_nof_faces(), mesh::ID_NONE, rInfoAll, and parallel::set_counts_displs().
Referenced by synchronize().
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| void mesh::ParallelTetMesh::set_point_ownership | ( | ) | [private] |
Determine ownership of point gids.
Definition at line 373 of file paralleltetmesh.cpp.
References _comm, _num_global_points, _point_owned_by_me, mesh::TetMesh::face_begin(), mesh::TetMesh::face_end(), mesh::TetMesh::get_nof_points(), mesh::ID_NONE, mesh::TetMesh::point_begin(), mesh::TetMesh::point_end(), point_gid(), rDebugAll, and parallel::set_ownership().
Referenced by synchronize().
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| void mesh::ParallelTetMesh::synchronize | ( | ) | [private] |
Change global ID of faces and edges so that they are uniform and consecutive among all processors
Definition at line 107 of file paralleltetmesh.cpp.
References fix_edge_orientation(), set_edge_gids(), set_face_gids(), and set_point_ownership().
Referenced by finalize_mesh().
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MPI_Comm mesh::ParallelTetMesh::_comm [private] |
MPI communicator
Definition at line 195 of file paralleltetmesh.h.
Referenced by get_comm(), get_num_global_tets(), ParallelTetMesh(), set_edge_gids(), set_face_gids(), and set_point_ownership().
std::vector<id_t> mesh::ParallelTetMesh::_edge_gids [private] |
Vector containing global ID's of local edges
Definition at line 228 of file paralleltetmesh.h.
Referenced by edge_gid(), get_edge_gids(), and set_edge_gids().
std::vector<id_t> mesh::ParallelTetMesh::_face_gids [private] |
Vector containing global ID's of local faces
Definition at line 225 of file paralleltetmesh.h.
Referenced by face_gid(), and set_face_gids().
int mesh::ParallelTetMesh::_mpi_rank [private] |
ID number of this processor
Definition at line 201 of file paralleltetmesh.h.
Referenced by ParallelTetMesh(), set_edge_gids(), and set_face_gids().
int mesh::ParallelTetMesh::_mpi_size [private] |
Number of processors
Definition at line 198 of file paralleltetmesh.h.
Referenced by ParallelTetMesh().
id_t mesh::ParallelTetMesh::_my_edges[4] [private] |
Array (a, b, c, d) of 4 id_t's. Describes the set of global ID's of processor-local edges in this fashion [a,b) U [c,d)
Definition at line 239 of file paralleltetmesh.h.
Referenced by is_owned_edge(), and set_edge_gids().
id_t mesh::ParallelTetMesh::_my_faces[4] [private] |
Array (a, b, c, d) of 4 id_t's. Describes the set of gids of processor-local faces in this fashion [a,b) U [c,d)
Definition at line 243 of file paralleltetmesh.h.
Referenced by is_owned_face(), and set_face_gids().
id_t mesh::ParallelTetMesh::_num_global_edges [private] |
Number of global edges.
Definition at line 217 of file paralleltetmesh.h.
Referenced by get_num_global_edges(), and set_edge_gids().
id_t mesh::ParallelTetMesh::_num_global_faces [private] |
Number of global faces.
Definition at line 222 of file paralleltetmesh.h.
Referenced by get_num_global_faces(), and set_face_gids().
int mesh::ParallelTetMesh::_num_global_points [private] |
Number of global points.
Definition at line 212 of file paralleltetmesh.h.
Referenced by get_num_global_points(), and set_point_ownership().
int mesh::ParallelTetMesh::_point_counter [private] |
Array containing current number of nodes inserted into mesh
Definition at line 207 of file paralleltetmesh.h.
Referenced by initPoint(), insertPoint(), and ParallelTetMesh().
std::vector<id_t> mesh::ParallelTetMesh::_point_gids [private] |
Vector containing global ID's of local faces
Definition at line 231 of file paralleltetmesh.h.
Referenced by get_node_gids(), initPoint(), insertPoint(), and point_gid().
std::map<int,int> mesh::ParallelTetMesh::_point_local_id [private] |
Map containing local ID's of points stored locally, with global ID's as the keys. For reverse lookup possibility
Definition at line 235 of file paralleltetmesh.h.
Referenced by insertPoint(), insertTet(), is_owned_point(), and lookupFace().
std::vector<bool> mesh::ParallelTetMesh::_point_owned_by_me [private] |
Vector determining if point is owned by me. Indexed by lid.
Definition at line 178 of file paralleltetmesh.h.
Referenced by is_owned_point(), and set_point_ownership().
int mesh::ParallelTetMesh::_tet_counter [private] |
Array containing current number of tetrahedra inserted into mesh
Definition at line 204 of file paralleltetmesh.h.
Referenced by initTet(), insertTet(), and ParallelTetMesh().
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