AmrYtWriter Class Reference

#include <AmrYtWriter.h>

Inheritance diagram for AmrYtWriter:

Collaboration diagram for AmrYtWriter:

Public Member Functions
	AmrYtWriter (int step, int bin=0)
void	writeFields (const amr::AmrScalarFieldContainer_t &rho, const amr::AmrScalarFieldContainer_t &phi, const amr::AmrVectorFieldContainer_t &efield, const amr::AmrIntArray_t &refRatio, const amr::AmrGeomContainer_t &geom, const int &nLevel, const double &time, const double &scale)
void	writeBunch (const AmrPartBunch *bunch_p, const double &time, const double &gamma)
Public Member Functions inherited from AbstractAmrWriter
virtual	~AbstractAmrWriter ()

Private Member Functions
void	writeParticles_m (int level, std::ofstream &ofs, int fnum, amrex::Vector< int > &which, amrex::Vector< int > &count, amrex::Vector< long > &where, const AmrPartBunch *bunch_p, const double gamma) const

Private Attributes
std::string	dir_m
	directory where to write files More...
std::vector< std::string >	intData_m
	integer bunch data More...
std::vector< std::string >	realData_m
	real bunch data More...

Detailed Description

Definition at line 34 of file AmrYtWriter.h.

Constructor & Destructor Documentation

AmrYtWriter()

AmrYtWriter::AmrYtWriter ( int  step, int  bin = 0  )

explicit

Parameters

step	we write
bin	energy bin we write (multi-bunch simulation)

Definition at line 39 of file AmrYtWriter.cpp.

References Communicate::barrier(), IpplInfo::Comm, dir_m, Hypervolume::fs, OpalData::getAuxiliaryOutputDirectory(), OpalData::getInputBasename(), OpalData::getInstance(), intData_m, IpplInfo::myNode(), and realData_m.

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Member Function Documentation

writeBunch()

void AmrYtWriter::writeBunch ( const AmrPartBunch *  bunch_p, const double &  time, const double &  scale  )

virtual

Parameters

bunch_p
time
scale	used for mapping

Implements AbstractAmrWriter.

Definition at line 298 of file AmrYtWriter.cpp.

References allreduce(), Communicate::barrier(), IpplInfo::Comm, dir_m, BoxLibLayout< T, Dim >::finestLevel(), AmrParticleBase< PLayout >::getAmrLayout(), AmrPartBunch::getAmrParticleBase(), PartBunchBase< T, Dim >::getLayout(), AmrParticleBase< PLayout >::getLocalNumPerLevel(), PartBunchBase< T, Dim >::getTotalNum(), Options::info, intData_m, max(), min(), IpplInfo::myNode(), realData_m, where(), and writeParticles_m().

Referenced by AmrBoxLib::computeSelfFields_cycl().

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writeFields()

void AmrYtWriter::writeFields ( const amr::AmrScalarFieldContainer_t &  rho, const amr::AmrScalarFieldContainer_t &  phi, const amr::AmrVectorFieldContainer_t &  efield, const amr::AmrIntArray_t &  refRatio, const amr::AmrGeomContainer_t &  geom, const int &  nLevel, const double &  time, const double &  scale  )

virtual

Write yt files to the simulation subdirectory data/amr/yt. The data can be visualized using the python script pyOPALTools/amrPlots/visualize.py. Use the help to find out how to call the script.

Implements AbstractAmrWriter.

Definition at line 93 of file AmrYtWriter.cpp.

References Communicate::barrier(), IpplInfo::Comm, dir_m, IpplInfo::myNode(), and Hypervolume::n.

Referenced by AmrBoxLib::computeSelfFields_cycl().

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writeParticles_m()

void AmrYtWriter::writeParticles_m ( int  level, std::ofstream &  ofs, int  fnum, amrex::Vector< int > &  which, amrex::Vector< int > &  count, amrex::Vector< long > &  where, const AmrPartBunch *  bunch_p, const double  gamma  ) const

private

Definition at line 558 of file AmrYtWriter.cpp.

References AmrParticleLevelCounter< Key, T, Compare, Allocator >::begin(), PartBunchBase< T, Dim >::Bf, PartBunchBase< T, Dim >::Bin, PartBunchBase< T, Dim >::dt, PartBunchBase< T, Dim >::Ef, AmrPartBunch::getAmrParticleBase(), OpalData::getInstance(), PartBunchBase< T, Dim >::getLayout(), AmrParticleBase< PLayout >::getLocalNumPerLevel(), AmrParticleBase< PLayout >::Grid, PartBunchBase< T, Dim >::ID, Options::info, intData_m, PartBunchBase< T, Dim >::M, IpplInfo::myNode(), PartBunchBase< T, Dim >::P, PartBunchBase< T, Dim >::Q, PartBunchBase< T, Dim >::R, realData_m, and where().

Referenced by writeBunch().

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Member Data Documentation

dir_m

std::string AmrYtWriter::dir_m

private

directory where to write files

Definition at line 88 of file AmrYtWriter.h.

Referenced by AmrYtWriter(), writeBunch(), and writeFields().

intData_m

std::vector<std::string> AmrYtWriter::intData_m

private

integer bunch data

Definition at line 90 of file AmrYtWriter.h.

Referenced by AmrYtWriter(), writeBunch(), and writeParticles_m().

realData_m

std::vector<std::string> AmrYtWriter::realData_m

private

real bunch data

Definition at line 91 of file AmrYtWriter.h.

Referenced by AmrYtWriter(), writeBunch(), and writeParticles_m().

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The documentation for this class was generated from the following files:

• /Users/gsell/src/OPAL/src/src/Amr/AmrYtWriter.h
• /Users/gsell/src/OPAL/src/src/Amr/AmrYtWriter.cpp