BoxParticleCachingPolicy.h

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#ifndef BOX_PARTICLE_CACHING_POLICY
#define BOX_PARTICLE_CACHING_POLICY
 
/*
 *
 * The Box caching layout ensures that each node has all ghost particles
 * for each external particle that is inside an extended bounding box
 *
 */
 
 
#include <algorithm>
#include <map>
 
#include "Message/Message.h"
#include "Message/Communicate.h"
#include "Message/Format.h"
#include "Message/MsgBuffer.h"
 
template <class T, unsigned Dim, class Mesh, class CachingPolicy> class ParticleSpatialLayout;
 
template<class T, unsigned Dim, class Mesh>
class BoxParticleCachingPolicy {
public:
        BoxParticleCachingPolicy()
        {
                std::fill(boxDimension, boxDimension+Dim, T());
        }
 
        void setCacheDimension(int d, T length)
        {
                boxDimension[d] = length;
        }
 
        void setAllCacheDimensions(T length)
        {
                std::fill(boxDimension, boxDimension+Dim, length);
        }
template<class C>
        void updateCacheInformation(
                ParticleSpatialLayout<T, Dim, Mesh, C > &PLayout
                )
        {
                RegionLayout<T,Dim,Mesh> &RLayout = PLayout.getLayout();
                NDRegion<T,Dim> globalDomain = RLayout.getDomain();
 
                typename RegionLayout<T,Dim,Mesh>::iterator_iv  localVN = RLayout.begin_iv();
                typename RegionLayout<T,Dim,Mesh>::iterator_iv localVNend = RLayout.end_iv();
 
                regions.clear();
 
 
                //fill in boundary conditions
                std::fill(periodic, periodic+2*Dim, false);
 
                if (PLayout.getUpdateFlag(ParticleLayout<T,Dim>::BCONDS))
                {
                        ParticleBConds<T,Dim>& pBConds = PLayout.getBConds();
                        typename ParticleBConds<T,Dim>::ParticleBCond periodicBCond=ParticlePeriodicBCond;
 
                        for (unsigned d=0; d<2*Dim; ++d)
                        {
                                if(pBConds[d] == periodicBCond)
                                {
                                        periodic[d] = true;
                                }
                        }
                }
 
 
                for (;localVN!=localVNend;++localVN)
                {
                        //get local domain
                        NDRegion<T,Dim> ldom = (*localVN).second->getDomain();
 
                        //extrude local domain
                        NDRegion<T,Dim> exdom;
                        for(unsigned int d = 0;d<Dim;++d)
                        {
                                exdom[d] = PRegion<T>(ldom[d].first()- boxDimension[d],
                                                                          ldom[d].last() + boxDimension[d]);
                        }
 
                        Offset_t offset;
                        std::fill(offset.begin(), offset.end(), 0);
 
                                //get all relevant offsets
                                for(unsigned int d = 0;d<Dim;++d)
                                {
                                        if(periodic[2*d] && (exdom[d].first() < globalDomain[d].first()))
                                        {
                                                offset[d] = globalDomain[d].length();
                                        }
                                        else if(periodic[2*d+1] && (exdom[d].last() > globalDomain[d].last()))
                                        {
                                                offset[d] = -globalDomain[d].length();
                                        }
                                }
                                //cycle through all combinations
                                int onoff[Dim];
                                std::fill(onoff, onoff+Dim, 0);
                                while(true)
                                {
 
                                        NDRegion<T,Dim> chckdom;
                                        for(unsigned int d = 0;d<Dim;++d)
                                        {
                                                chckdom[d] = PRegion<T>(ldom[d].first()- boxDimension[d]+onoff[d]*offset[d],
                                                                                                ldom[d].last() + boxDimension[d]+onoff[d]*offset[d]);
                                        }
 
                                        //get touched external domains
                                        typename RegionLayout<T,Dim,Mesh>::touch_range_dv touchRange = RLayout.touch_range_rdv(chckdom);
 
 
                                        typename RegionLayout<T,Dim,Mesh>::touch_iterator_dv i;
 
 
                                        for(i = touchRange.first; i != touchRange.second; ++i)
                                        {
                                                int node = (*i).second->getNode();
                                                if(node == Ippl::myNode())//don't add local node
                                                        continue;
                                                NDRegion<T,Dim> dom = (*i).second->getDomain();
                                                Offset_t tmpoffset;
                                                for(unsigned int d = 0;d<Dim;++d)
                                                {
                                                        dom[d] = PRegion<T>(dom[d].first() - onoff[d]*offset[d],
                                                                                                dom[d].last()  - onoff[d]*offset[d]);
                                                        tmpoffset[d] = onoff[d]*offset[d];
                                                }
 
                                                regions[node].push_back(std::make_pair(dom,tmpoffset));
                                        }
 
                                        //generate next combinations. this is basically a binary incrementer
                                        unsigned int j = 0;
                                        for(;j<Dim;++j)
                                        {
                                                if(offset[j]==0)
                                                        continue;//skip irrelevant directions
                                                if((onoff[j] = !onoff[j]))
                                                        break;//flip and continue if there's a "carry"
                                        }
 
                                        if(j==Dim)
                                                break;
                                }
 
                }
        }
 
template<class C>
        void updateGhostParticles(
                IpplParticleBase< ParticleSpatialLayout<T,Dim,Mesh,C > > &PData,
                ParticleSpatialLayout<T, Dim, Mesh, C > &/*PLayout*/
                )
        {
 
                Ippl::Comm->barrier();
                typedef typename std::map<unsigned, std::list<std::pair<NDRegion<T,Dim>, Offset_t> > >::iterator m_iterator;
 
                //dump the old ghost particles
                PData.ghostDestroy(PData.getGhostNum(), 0);
 
                //get tag
                int tag = Ippl::Comm->next_tag(P_SPATIAL_GHOST_TAG, P_LAYOUT_CYCLE);
 
                //these are needed to free data for nonblocking sends
                std::vector<MPI_Request> requests;
                std::vector<MsgBuffer*> buffers;
 
                //for each possible target node
                for(m_iterator n = regions.begin();n!=regions.end();++n)
                {
                        int node = n->first;
 
                        //find particles that need to be sent
                        std::vector<size_t> sendlist;
                        std::vector<Offset_t> offsetlist;
                        for(typename std::list<std::pair<NDRegion<T,Dim>, Offset_t> >::iterator li = n->second.begin();li!=n->second.end();++li)
                        {
                                NDRegion<T, Dim> region = (*li).first;
 
                                for (unsigned int i = 0;i < PData.getLocalNum();++i)
                                {
                                        NDRegion<T,Dim> ploc;
                                        for (unsigned int d = 0;d < Dim;++d)
                                                ploc[d] = PRegion<T>(PData.R[i][d] - boxDimension[d],
                                                                                         PData.R[i][d] + boxDimension[d]);
 
                                        if(region.touches(ploc))
                                        {
                                                sendlist.push_back(i);
                                                offsetlist.push_back((*li).second);
                                        }
                                }
                        }
 
 
                        //and send them
                        if(sendlist.empty())
                        {
                                //don't bother creating an empty buffer just send an empty message
                                requests.push_back(Ippl::Comm->raw_isend(0, 0, node, tag));
                        }
                        else
                        {
                                //pack and send ghost particles
                                MsgBuffer *msgbuf = 0;
                                PData.writeMsgBufferWithOffsets(msgbuf, sendlist,offsetlist);
                                MPI_Request request = Ippl::Comm->raw_isend(msgbuf->getBuffer(), msgbuf->getSize(), node, tag);
 
                                requests.push_back(request);
                                buffers.push_back(msgbuf);
                        }
 
                }
 
 
                //receive ghost particles
                Format *format = PData.getFormat();
 
                for(unsigned int n = 0;n<regions.size();++n)
                {
                        int node = Communicate::COMM_ANY_NODE;
            char *buffer = 0;
            int bufsize = Ippl::Comm->raw_probe_receive(buffer, node, tag);
            if(bufsize>0)
            {
                                MsgBuffer recvbuf(format, buffer, bufsize);
                                PData.readGhostMsgBuffer(&recvbuf, node);
                        }
                }
 
                //wait for communication to finish and clean up buffers
        MPI_Request* requests_ptr = requests.empty()? static_cast<MPI_Request*>(0): &(requests[0]);
        MPI_Waitall(requests.size(), requests_ptr, MPI_STATUSES_IGNORE);
        for (unsigned int j = 0; j<buffers.size(); ++j)
        {
                        delete buffers[j]->getFormat();
            delete buffers[j];
        }
 
                delete format;
        }
protected:
        ~BoxParticleCachingPolicy() {}
private:
        struct Offset_t
        {
                T data[Dim];
                T& operator[](int i) { return data[i]; }
                T operator[](int i) const { return data[i]; }
                T* begin() { return data; }
                T* end() { return data+Dim; }
        };
 
        T boxDimension[Dim];
        bool periodic[2*Dim];
        std::map<unsigned, std::list<std::pair<NDRegion<T,Dim>, Offset_t> > > regions;
};
 
#endif