#include <BoundaryGeometry.h>

Inheritance diagram for BoundaryGeometry:

Collaboration diagram for BoundaryGeometry:

Public Types
enum	DebugFlags { debug_isInside = 0x0001, debug_fastIsInside = 0x0002, debug_intersectRayBoundary = 0x0004, debug_intersectLineSegmentBoundary = 0x0008, debug_intersectTinyLineSegmentBoundary = 0x0010, debug_PartInside = 0x0020 }

Public Member Functions
	BoundaryGeometry ()

virtual	~BoundaryGeometry ()

virtual bool	canReplaceBy (Object *object)
	Test if replacement is allowed. More...

virtual BoundaryGeometry *	clone (const std::string &name)
	Return a clone. More...

virtual void	execute ()
	Execute the command. More...

virtual void	update ()
	Update this object. More...

void	updateElement (ElementBase *element)

void	initialize ()

int	partInside (const Vector_t &r, const Vector_t &v, const double dt, Vector_t &intecoords, int &triId)

Inform &	printInfo (Inform &os) const

void	writeGeomToVtk (std::string fn)

std::string	getFilename () const

Topology	getTopology () const

double	getA ()

double	getB ()

double	getC ()

double	getS ()

double	getLength ()

double	getL1 ()

double	getL2 ()

size_t	getNumBFaces ()

Vector_t	gethr ()

Vektor< int, 3 >	getnr ()

Vector_t	getmincoords ()

Vector_t	getmaxcoords ()

bool	getInsidePoint (Vector_t &pt)

bool	findInsidePoint (void)

int	intersectRayBoundary (const Vector_t &P, const Vector_t &v, Vector_t &I)

int	fastIsInside (const Vector_t &reference_pt, const Vector_t &P)

void	enableDebug (enum DebugFlags flags)

void	disableDebug (enum DebugFlags flags)

Public Member Functions inherited from Definition
virtual	~Definition ()

virtual const std::string	getCategory () const
	Return the object category as a string. More...

virtual bool	shouldTrace () const
	Trace flag. More...

virtual bool	shouldUpdate () const
	Update flag. More...

Public Member Functions inherited from Object
virtual	~Object ()

void	copyAttributes (const Object &)
	Copy attributes from another object. More...

virtual Attribute *	findAttribute (const std::string &name)
	Find an attribute by name. More...

virtual const Attribute *	findAttribute (const std::string &name) const
	Find an attribute by name. More...

virtual Object *	makeTemplate (const std::string &, TokenStream &, Statement &)
	Macro handler function. More...

virtual Object *	makeInstance (const std::string &name, Statement &, const Parser *)
	Macro handler function. More...

virtual void	parse (Statement &)
	Parse the object. More...

virtual void	parseShortcut (Statement &, bool eval=true)
	Parser for single-attribute commands. More...

virtual void	print (std::ostream &) const
	Print the object. More...

virtual void	printValue (std::ostream &) const

virtual void	printHelp (std::ostream &) const
	Print help. More...

virtual void	replace (Object oldObject, Object newObject)
	Replace references. More...

bool	isBuiltin () const
	True, if [b]this[/b] is a built-in object. More...

virtual bool	isShared () const
	Shared flag. More...

virtual void	setShared (bool)
	Set/reset shared flag. More...

void	setDirty (bool)
	Set/reset the [b]modified[/b] flag. More...

bool	isDirty () const
	True, if the [b]modified[/b] flag is set. More...

void	setFlag (bool)
	Flag/unflag this object, e. g. to control output of objects for. More...

bool	isFlagged () const
	True, if [b]this[/b] is flagged by setFlag(true). More...

const Object *	getBaseObject () const
	Return the object's base type object. More...

const std::string &	getOpalName () const
	Return object name. More...

Object *	getParent () const
	Return parent pointer. More...

bool	isTreeMember (const Object *subTree) const
	Test for tree membership. More...

void	setOpalName (const std::string &name)
	Set object name. More...

void	setParent (Object *)
	Set parent object. More...

void	clear ()
	Clear the occurrence counter. More...

int	increment ()
	Increment and return the occurrence counter. More...

int	occurrenceCount ()
	Return the occurrence counter. More...

void	registerReference (Invalidator *a)
	Register a reference to this object. More...

void	unregisterReference (Invalidator *a)
	Unegister a reference to this object. More...

void	registerOwnership (const AttributeHandler::OwnerType &itsClass) const

Public Member Functions inherited from RCObject
int	addReference () const
	Increment reference count. More...

int	removeReference () const
	Decrement the reference count. More...

bool	isShared () const
	Test for sharing. More...

Static Public Member Functions
static BoundaryGeometry *	find (const std::string &name)

Private Types
enum	INTERSECTION_TESTS { SEGMENT, RAY, LINE }

enum	{ FGEOM, LENGTH, S, L1, L2, A, B, C, TOPO, ZSHIFT, XYZSCALE, XSCALE, YSCALE, ZSCALE, INSIDEPOINT, SIZE }

Private Member Functions
bool	isInside (const Vector_t &P)

int	intersectTriangleVoxel (const int triangle_id, const int i, const int j, const int k)

int	intersectTinyLineSegmentBoundary (const Vector_t &, const Vector_t &, Vector_t &, int &)

int	intersectLineSegmentBoundary (const Vector_t &P0, const Vector_t &P1, Vector_t &intersection_pt, int &triangle_id)

	BoundaryGeometry (const BoundaryGeometry &)

void	operator= (const BoundaryGeometry &)

	BoundaryGeometry (const std::string &name, BoundaryGeometry *parent)

const Vector_t &	getPoint (const int triangle_id, const int vertex_id)

int	intersectLineTriangle (const enum INTERSECTION_TESTS kind, const Vector_t &P0, const Vector_t &P1, const int triangle_id, Vector_t &I)

int	mapVoxelIndices2ID (const int i, const int j, const int k)

Vector_t	mapIndices2Voxel (const int, const int, const int)

Vector_t	mapPoint2Voxel (const Vector_t &)

void	computeMeshVoxelization (void)

Private Attributes
std::string	h5FileName_m

std::vector< Vector_t >	Points_m

std::vector< std::array < unsigned int, 4 > >	Triangles_m

std::vector< Vector_t >	TriNormals_m

std::vector< double >	TriAreas_m

Vector_t	minExtent_m

Vector_t	maxExtent_m

struct {
Vector_t minExtent

Vector_t maxExtent

Vector_t sizeOfVoxel

Vektor< int, 3 > nr_m

std::unordered_map< int, std::unordered_set< int > > ids

}	voxelMesh_m

int	debugFlags_m

bool	haveInsidePoint_m

Vector_t	insidePoint_m

gsl_rng *	randGen_m

IpplTimings::TimerRef	Tinitialize_m

IpplTimings::TimerRef	TisInside_m

IpplTimings::TimerRef	TfastIsInside_m

IpplTimings::TimerRef	TRayTrace_m

IpplTimings::TimerRef	TPartInside_m

Additional Inherited Members
Public Attributes inherited from Object
std::vector< Attribute >	itsAttr
	The object attributes. More...

Protected Member Functions inherited from Definition
	Definition (int size, const char name, const char help)
	Constructor for exemplars. More...

	Definition (const std::string &name, Definition *parent)
	Constructor for clones. More...

Protected Member Functions inherited from Object
	Object (int size, const char name, const char help)
	Constructor for exemplars. More...

	Object (const std::string &name, Object *parent)
	Constructor for clones. More...

Protected Member Functions inherited from RCObject
	RCObject ()
	Default constructor. More...

	RCObject (const RCObject &)
	Copy constructor. More...

virtual	~RCObject ()=0

RCObject &	operator= (const RCObject &right)

Protected Attributes inherited from Object
bool	builtin
	Built-in flag. More...

bool	modified
	Dirty flag. More...

bool	flagged
	Object flag. More...

Detailed Description

Definition at line 58 of file BoundaryGeometry.h.

Member Enumeration Documentation

anonymous enum

private

Enumerator
FGEOM
LENGTH
S
L1
L2
A
B
C
TOPO
ZSHIFT
XYZSCALE
XSCALE
YSCALE
ZSCALE
INSIDEPOINT
SIZE

Definition at line 298 of file BoundaryGeometry.h.

enum BoundaryGeometry::DebugFlags

Enumerator
debug_isInside
debug_fastIsInside
debug_intersectRayBoundary
debug_intersectLineSegmentBoundary
debug_intersectTinyLineSegmentBoundary
debug_PartInside

Definition at line 192 of file BoundaryGeometry.h.

enum BoundaryGeometry::INTERSECTION_TESTS

private

Enumerator
SEGMENT
RAY
LINE

Definition at line 280 of file BoundaryGeometry.h.

Constructor & Destructor Documentation

BoundaryGeometry::BoundaryGeometry ( )

Definition at line 948 of file BoundaryGeometry.cpp.

References A, B, Object::builtin, C, clone(), OpalData::define(), FGEOM, OpalData::getInstance(), Attributes::getString(), IpplTimings::getTimer(), h5FileName_m, initialize(), INSIDEPOINT, Object::itsAttr, L1, L2, LENGTH, Attributes::makePredefinedString(), Attributes::makeReal(), Attributes::makeRealArray(), Attributes::makeString(), randGen_m, Object::registerOwnership(), S, AttributeHandler::STATEMENT, TfastIsInside_m, Tinitialize_m, TisInside_m, TOPO, TPartInside_m, TRayTrace_m, update(), XSCALE, XYZSCALE, YSCALE, ZSCALE, and ZSHIFT.

Referenced by clone().

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BoundaryGeometry::~BoundaryGeometry ( )

virtual

Definition at line 1070 of file BoundaryGeometry.cpp.

References randGen_m.

BoundaryGeometry::BoundaryGeometry ( const BoundaryGeometry & )

private

BoundaryGeometry::BoundaryGeometry	(	const std::string &	name,
		BoundaryGeometry *	parent
	)

private

Definition at line 1052 of file BoundaryGeometry.cpp.

References FGEOM, Attributes::getString(), IpplTimings::getTimer(), h5FileName_m, initialize(), Object::itsAttr, randGen_m, TfastIsInside_m, Tinitialize_m, TisInside_m, TPartInside_m, and TRayTrace_m.

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Member Function Documentation

bool BoundaryGeometry::canReplaceBy ( Object * object )

virtual

Test if replacement is allowed.

Reimplemented from Object.

Definition at line 1074 of file BoundaryGeometry.cpp.

BoundaryGeometry * BoundaryGeometry::clone ( const std::string & name )

virtual

Return a clone.

Implements Object.

Definition at line 1079 of file BoundaryGeometry.cpp.

References BoundaryGeometry().

Referenced by BoundaryGeometry(), and TrackRun::setBoundaryGeometry().

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void BoundaryGeometry::computeMeshVoxelization ( void )

inlineprivate

Definition at line 1586 of file BoundaryGeometry.cpp.

References Util::combineFilePath(), Options::enableVTK, endl(), OpalData::getAuxiliaryOutputDirectory(), OpalData::getInstance(), getPoint(), h5FileName_m, INSIDE, intersectTriangleVoxel(), level2(), mapPoint2VoxelIndices, mapVoxelIndices2ID(), max(), min(), IpplInfo::myNode(), Triangles_m, and voxelMesh_m.

Referenced by initialize().

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void BoundaryGeometry::disableDebug ( enum DebugFlags flags )

inline

Definition at line 205 of file BoundaryGeometry.h.

References debugFlags_m.

void BoundaryGeometry::enableDebug ( enum DebugFlags flags )

inline

Definition at line 201 of file BoundaryGeometry.h.

References debugFlags_m.

void BoundaryGeometry::execute ( )

virtual

Execute the command.

Reimplemented from Object.

Definition at line 1088 of file BoundaryGeometry.cpp.

References IpplTimings::getTimer(), TfastIsInside_m, Tinitialize_m, TisInside_m, TPartInside_m, TRayTrace_m, and update().

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int BoundaryGeometry::fastIsInside	(	const Vector_t &	reference_pt,
		const Vector_t &	P
	)

Definition at line 1427 of file BoundaryGeometry.cpp.

References Physics::c, ceil(), debug_fastIsInside, debug_intersectTinyLineSegmentBoundary, debugFlags_m, endl(), intersectTinyLineSegmentBoundary(), Voxel::isInside(), maxExtent_m, min(), minExtent_m, test::result, IpplTimings::startTimer(), IpplTimings::stopTimer(), TfastIsInside_m, and voxelMesh_m.

Referenced by ArbitraryDomain::compute(), findInsidePoint(), and isInside().

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BoundaryGeometry * BoundaryGeometry::find ( const std::string & name )

static

Definition at line 1097 of file BoundaryGeometry.cpp.

References OpalData::find(), and OpalData::getInstance().

Referenced by FieldSolver::initSolver(), TrackRun::setBoundaryGeometry(), OpalDrift::update(), OpalCavity::update(), and OpalCyclotron::update().

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bool BoundaryGeometry::findInsidePoint ( void )

Definition at line 1363 of file BoundaryGeometry.cpp.

References B, endl(), fastIsInside(), insidePoint_m, level2(), maxExtent_m, minExtent_m, and Hypervolume::n.

Referenced by initialize().

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double BoundaryGeometry::getA ( )

inline

Definition at line 111 of file BoundaryGeometry.h.

References A, Attributes::getReal(), and Object::itsAttr.

Referenced by EllipticDomain::EllipticDomain(), FieldSolver::initSolver(), and MGPoissonSolver::MGPoissonSolver().

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double BoundaryGeometry::getB ( )

inline

Definition at line 115 of file BoundaryGeometry.h.

References B, Attributes::getReal(), and Object::itsAttr.

Referenced by EllipticDomain::EllipticDomain(), and MGPoissonSolver::MGPoissonSolver().

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double BoundaryGeometry::getC ( )

inline

Definition at line 119 of file BoundaryGeometry.h.

References C, Attributes::getReal(), and Object::itsAttr.

Referenced by MGPoissonSolver::MGPoissonSolver().

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std::string BoundaryGeometry::getFilename ( ) const

inline

Definition at line 97 of file BoundaryGeometry.h.

References FGEOM, Attributes::getString(), and Object::itsAttr.

Referenced by MGPoissonSolver::MGPoissonSolver().

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Vector_t BoundaryGeometry::gethr ( )

inline

Return the hr_m.

Definition at line 149 of file BoundaryGeometry.h.

References voxelMesh_m.

bool BoundaryGeometry::getInsidePoint ( Vector_t & pt )

inline

Definition at line 172 of file BoundaryGeometry.h.

References haveInsidePoint_m, and insidePoint_m.

Referenced by ArbitraryDomain::ArbitraryDomain().

double BoundaryGeometry::getL1 ( )

inline

Definition at line 131 of file BoundaryGeometry.h.

References Attributes::getReal(), Object::itsAttr, and L1.

Referenced by MGPoissonSolver::MGPoissonSolver().

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double BoundaryGeometry::getL2 ( )

inline

Definition at line 135 of file BoundaryGeometry.h.

References Attributes::getReal(), Object::itsAttr, and L2.

Referenced by MGPoissonSolver::MGPoissonSolver().

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double BoundaryGeometry::getLength ( )

inline

Definition at line 127 of file BoundaryGeometry.h.

References Attributes::getReal(), Object::itsAttr, and LENGTH.

Referenced by EllipticDomain::EllipticDomain().

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Vector_t BoundaryGeometry::getmaxcoords ( )

inline

Return the maxcoords_m.

Definition at line 168 of file BoundaryGeometry.h.

References maxExtent_m.

Referenced by ArbitraryDomain::ArbitraryDomain(), and MGPoissonSolver::MGPoissonSolver().

Vector_t BoundaryGeometry::getmincoords ( )

inline

Return the mincoords_m.

Definition at line 162 of file BoundaryGeometry.h.

References minExtent_m.

Referenced by ArbitraryDomain::ArbitraryDomain(), and MGPoissonSolver::MGPoissonSolver().

Vektor<int, 3> BoundaryGeometry::getnr ( )

inline

Return the nr_m.

Definition at line 155 of file BoundaryGeometry.h.

References voxelMesh_m.

size_t BoundaryGeometry::getNumBFaces ( )

inline

Return number of boundary faces.

Definition at line 142 of file BoundaryGeometry.h.

References Triangles_m.

const Vector_t& BoundaryGeometry::getPoint	(	const int	triangle_id,
		const int	vertex_id
	)

inlineprivate

Definition at line 275 of file BoundaryGeometry.h.

References PAssert, Points_m, and Triangles_m.

Referenced by computeMeshVoxelization(), initialize(), intersectLineTriangle(), intersectTinyLineSegmentBoundary(), and intersectTriangleVoxel().

double BoundaryGeometry::getS ( )

inline

Definition at line 123 of file BoundaryGeometry.h.

References Attributes::getReal(), Object::itsAttr, and S.

Referenced by EllipticDomain::EllipticDomain().

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Topology BoundaryGeometry::getTopology ( ) const

inline

Definition at line 101 of file BoundaryGeometry.h.

References BOXCORNER, ELLIPTIC, Attributes::getString(), Object::itsAttr, RECTANGULAR, and TOPO.

Referenced by MGPoissonSolver::MGPoissonSolver(), and printInfo().

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void BoundaryGeometry::initialize ( )

Definition at line 1649 of file BoundaryGeometry.cpp.

References Communicate::barrier(), C, IpplInfo::Comm, computeMeshVoxelization(), debugFlags_m, dot(), endl(), findInsidePoint(), floor(), IpplInfo::getComm(), getPoint(), Attributes::getReal(), Attributes::getRealArray(), h5FileName_m, haveInsidePoint_m, INSIDEPOINT, insidePoint_m, intersectLineTriangle(), isInside(), Object::itsAttr, level2(), max(), maxExtent, maxExtent_m, minExtent, minExtent_m, Hypervolume::n, nr_m, PAssert, PointID, Points_m, randGen_m, test::result, SEGMENT, sizeOfVoxel, SQR, sqrt(), IpplTimings::startTimer(), IpplTimings::stopTimer(), Tinitialize_m, TisInside_m, Triangles_m, TriAreas_m, TriNormals_m, void, voxelMesh_m, XSCALE, XYZSCALE, YSCALE, ZSCALE, and ZSHIFT.

Referenced by BoundaryGeometry().

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int BoundaryGeometry::intersectLineSegmentBoundary	(	const Vector_t &	P0,
		const Vector_t &	P1,
		Vector_t &	intersection_pt,
		int &	triangle_id
	)

private

Definition at line 2312 of file BoundaryGeometry.cpp.

References debug_intersectLineSegmentBoundary, debug_intersectTinyLineSegmentBoundary, debugFlags_m, endl(), intersectTinyLineSegmentBoundary(), mapPoint2VoxelIndices, max(), min(), and Hypervolume::n.

Referenced by intersectRayBoundary().

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int BoundaryGeometry::intersectLineTriangle	(	const enum INTERSECTION_TESTS	kind,
		const Vector_t &	P0,
		const Vector_t &	P1,
		const int	triangle_id,
		Vector_t &	I
	)