opal package
Subpackages
- opal.analysis package
- Notebooks
- opal.analysis.FieldAnalysis module
- opal.analysis.H5Statistics module
H5Statistics
H5Statistics._halo_2d_ellipsoidal_beam()
H5Statistics._select()
H5Statistics._selectBunch()
H5Statistics.find_beams()
H5Statistics.gaussian_kde()
H5Statistics.halo_2d_ellipsoidal_beam()
H5Statistics.halo_continuous_beam()
H5Statistics.halo_ellipsoidal_beam()
H5Statistics.histogram()
H5Statistics.kurtosis()
H5Statistics.mean()
H5Statistics.moment()
H5Statistics.projected_emittance()
H5Statistics.radial_halo_2d_ellipsoidal_beam()
H5Statistics.radial_halo_ellipsoidal_beam()
H5Statistics.radial_moment()
H5Statistics.radial_projected_emittance()
H5Statistics.rotate()
H5Statistics.selectData()
H5Statistics.skew()
- opal.analysis.OptimizerAnalysis module
- opal.analysis.SamplerStatistics module
- opal.analysis.Statistics module
- opal.analysis.StdOpalOutputAnalysis module
- opal.analysis.TrackOrbitAnalysis module
- opal.analysis.cyclotron module
- opal.analysis.pareto_fronts module
- opal.datasets package
- Notebooks
- opal.datasets.AmrDataset module
- opal.datasets.DatasetBase module
- opal.datasets.FieldDataset module
FieldDataset
FieldDataset._basename
FieldDataset._directory
FieldDataset._df
FieldDataset._dim
FieldDataset._fields
FieldDataset._loaded_step
FieldDataset._label_mapper
FieldDataset._npadding
FieldDataset._parser
FieldDataset._stride
FieldDataset._units
FieldDataset.__init__()
FieldDataset._count_files()
FieldDataset._find_nearest()
FieldDataset._get_combined_filename()
FieldDataset._load_step()
FieldDataset._zero_padding()
FieldDataset.dataframe
FieldDataset.getData()
FieldDataset.getLabel()
FieldDataset.getSlice()
FieldDataset.getUnit()
FieldDataset.get_mesh_spacing()
FieldDataset.indices
FieldDataset.names
FieldDataset.positions
FieldDataset.stride
- opal.datasets.GridDataset module
- opal.datasets.H5Dataset module
H5Dataset
H5Dataset.__parser
H5Dataset.__variable_mapper
H5Dataset.__label_mapper
H5Dataset.__unit_label_mapper
H5Dataset.__direction
H5Dataset.__init__()
H5Dataset.getData()
H5Dataset.getH5DataFrame()
H5Dataset.getLabel()
H5Dataset.getMonitorDataFrame()
H5Dataset.getUnit()
H5Dataset.isStepDataset()
H5Dataset.size
- opal.datasets.LBalDataset module
- opal.datasets.LossDataset module
- opal.datasets.MemoryDataset module
- opal.datasets.OptimizerDataset module
OptimizerDataset
OptimizerDataset.__parser
OptimizerDataset.__postfix
OptimizerDataset._loaded_generation
OptimizerDataset._loaded_optimizer
OptimizerDataset._loadedGeneration
OptimizerDataset.__init__()
OptimizerDataset._loadGeneration()
OptimizerDataset.bounds
OptimizerDataset.design_variables
OptimizerDataset.getData()
OptimizerDataset.getGenerationBasename()
OptimizerDataset.getLabel()
OptimizerDataset.getUnit()
OptimizerDataset.individuals()
OptimizerDataset.num_generations
OptimizerDataset.num_optimizers
OptimizerDataset.objectives
OptimizerDataset.size
- opal.datasets.PeakDataset module
- opal.datasets.ProbeHistDataset module
- opal.datasets.SDDSDatasetBase module
SDDSDatasetBase
SDDSDatasetBase._parser
SDDSDatasetBase._variable_mapper
SDDSDatasetBase._label_mapper
SDDSDatasetBase._unit_label_mapper
SDDSDatasetBase.__init__()
SDDSDatasetBase.dataframe
SDDSDatasetBase.getData()
SDDSDatasetBase.getLabel()
SDDSDatasetBase.getRow()
SDDSDatasetBase.getUnit()
SDDSDatasetBase.getVariables()
SDDSDatasetBase.size
- opal.datasets.SamplerDataset module
SamplerDataset
SamplerDataset.__parser
SamplerDataset.__nFiles
SamplerDataset.__actual_file_load()
SamplerDataset.__init__()
SamplerDataset.__load_file()
SamplerDataset.bounds
SamplerDataset.design_variables
SamplerDataset.getData()
SamplerDataset.getLabel()
SamplerDataset.getUnit()
SamplerDataset.loaded_file
SamplerDataset.objectives
SamplerDataset.size
- opal.datasets.SolverDataset module
- opal.datasets.StatDataset module
- opal.datasets.StdOpalOutputDataset module
- opal.datasets.TimeDataset module
- opal.datasets.TrackOrbitDataset module
- opal.datasets.filetype module
FileType
FileType.AMR
FileType.FIELD
FileType.GRID
FileType.H5
FileType.HIST
FileType.LBAL
FileType.LOSS
FileType.MEM
FileType.NONE
FileType.OPTIMIZER
FileType.OUTPUT
FileType.PEAK
FileType.SAMPLER
FileType.SMB
FileType.SOLVER
FileType.STAT
FileType.TIMING
FileType.TRACK_ORBIT
FileType.checkFileType()
FileType.extensionToFileType()
FileType.get_extensions()
FileType.get_parsers()
- opal.parser package
- Notebooks
- opal.parser.FieldParser module
FieldParser
FieldParser._columns
FieldParser._df
FieldParser._dim
FieldParser._stride
FieldParser.__init__()
FieldParser._check_header()
FieldParser._parse_header()
FieldParser.clear()
FieldParser.dataframe
FieldParser.dimension
FieldParser.field
FieldParser.get_unit_dictionary()
FieldParser.image
FieldParser.indices
FieldParser.is_scalar()
FieldParser.parse()
FieldParser.positions
FieldParser.stride
- opal.parser.H5Error module
- opal.parser.H5Parser module
- opal.parser.HistogramParser module
- opal.parser.LatticeParser module
- opal.parser.LossParser module
- opal.parser.OptimizerParser module
OptimizerParser
OptimizerParser.__ids
OptimizerParser.__dvar_values
OptimizerParser.__obj_values
OptimizerParser.__obj_names
OptimizerParser.__dvar_names
OptimizerParser.__pareto
OptimizerParser.__actual_parse()
OptimizerParser.__clear_container()
OptimizerParser.__hasLoaded()
OptimizerParser.__init__()
OptimizerParser.__parse_version_2_0_0()
OptimizerParser.__parse_version_2_1_0()
OptimizerParser.__reset_attributes()
OptimizerParser.check_file()
OptimizerParser.clear()
OptimizerParser.getAllInput()
OptimizerParser.getAllOutput()
OptimizerParser.getBounds()
OptimizerParser.getConstraints()
OptimizerParser.getDesignVariables()
OptimizerParser.getIDs()
OptimizerParser.getIndexOfID()
OptimizerParser.getIndividual()
OptimizerParser.getIndividualWithID()
OptimizerParser.getNumOfGenerations()
OptimizerParser.getObjectives()
OptimizerParser.num_optimizers
OptimizerParser.parse()
OptimizerParser.readGeneration()
- opal.parser.PeakParser module
- opal.parser.SDDSParser module
SDDSParser
SDDSParser.__removeNumber()
SDDSParser._checkVersion()
SDDSParser._column()
SDDSParser._data()
SDDSParser._description()
SDDSParser._get_type()
SDDSParser._hasVariable()
SDDSParser._parameter()
SDDSParser._parseHeader1_6()
SDDSParser._parseHeader1_9()
SDDSParser._version()
SDDSParser.clear()
SDDSParser.collectStatFileData()
SDDSParser.dataframe
SDDSParser.getDataOfVariable()
SDDSParser.getDescriptionOfVariable()
SDDSParser.getUnitOfVariable()
SDDSParser.getVariables()
SDDSParser.parse()
SDDSParser.size
- opal.parser.TimingParser module
TimingParser
TimingParser._data
TimingParser.__init__()
TimingParser._exportAscii()
TimingParser._exportPickle()
TimingParser._init_data_structure()
TimingParser._load_pkl()
TimingParser._order()
TimingParser.clear()
TimingParser.getProblemSize()
TimingParser.getTiming()
TimingParser.parse()
TimingParser.properties
TimingParser.read()
TimingParser.read_ippl_timing()
TimingParser.read_output_file()
TimingParser.write()
- opal.parser.TrackOrbitParser module
- opal.parser.sampler module
SamplerParser
SamplerParser.__id
SamplerParser.__tag
SamplerParser.__begin
SamplerParser.__end
SamplerParser.__dvars
SamplerParser.__dvar_bounds
SamplerParser.__objs
SamplerParser.__fix_bound_type()
SamplerParser.__init__()
SamplerParser.__parse_version_2_0_0()
SamplerParser.__parse_version_2_1_0()
SamplerParser.begin
SamplerParser.bounds
SamplerParser.clear()
SamplerParser.design_variables
SamplerParser.end
SamplerParser.getIndividual()
SamplerParser.getObjectives()
SamplerParser.num_samples
SamplerParser.objectives
SamplerParser.parse()
- opal.utilities package
- opal.visualization package
- Subpackages
- Notebooks
- Load Dataset
- Projection Plot
- Slice Plot
- Line Plot
- Particle Plot
- Overlay Particles onto Fields
- H5Plotter_RingMultiBunch
- ProbePlotter
- ProbePlotter_PeakFile
- OptimizerPlotter
- SamplerPlotter
- StatPlotter_FODO
- StatPlotter_Gantry
- StatPlotter_RingCyclotron
- Load the RingCyclotron.stat file
- Set the plotting style
- Do some plotting …
- Load the RingCyclotron.h5 file
- Do some plotting …
- Do some statistics on data
- Load the RingCyclotron.mem file
- Do some plotting …
- Load the RingCyclotron.lbal file
- Do some plotting …
- Load the RingCyclotron-trackOrbit file
- Do some plotting …
- Load timing.dat file
- Do some plotting …
- opal.visualization.AmrPlotter module
- opal.visualization.BasePlotter module
- opal.visualization.FieldPlotter module
- opal.visualization.GridPlotter module
- opal.visualization.H5Plotter module
- opal.visualization.MemoryPlotter module
- opal.visualization.OptimizerPlotter module
OptimizerPlotter
OptimizerPlotter.__find()
OptimizerPlotter.__init__()
OptimizerPlotter.__natural_sort()
OptimizerPlotter.__sort_list()
OptimizerPlotter.plot_dvar_evolution()
OptimizerPlotter.plot_individual_bounds()
OptimizerPlotter.plot_objective_evolution()
OptimizerPlotter.plot_objectives()
OptimizerPlotter.plot_parallel_coordinates()
OptimizerPlotter.plot_pareto_front()
- opal.visualization.PeakPlotter module
- opal.visualization.ProbePlotter module
- opal.visualization.ProfilingPlotter module
- opal.visualization.SamplerPlotter module
- opal.visualization.SolverPlotter module
- opal.visualization.StatPlotter module
- opal.visualization.StdOpalOutputPlotter module
- opal.visualization.TimingPlotter module
- opal.visualization.TrackOrbitPlotter module
- opal.visualization.formatter module
opal.config module
opal.opal module
- opal.opal._append_dataset(datasets, ftype, astype, directory, fname)[source]
Append a dataset to the list.
- Parameters:
- Returns:
True if reading is stopped (i.e. sampler, optimizer and AMR datasets), False otherwise.
- Return type:
bool