#include <H5PartWrapperForPS.h>

Inheritance diagram for H5PartWrapperForPS:

Collaboration diagram for H5PartWrapperForPS:

Public Member Functions
	H5PartWrapperForPS (const std::string &fileName, h5_int32_t flags=H5_O_WRONLY)

	H5PartWrapperForPS (const std::string &fileName, int restartStep, std::string sourceFile, h5_int32_t flags=H5_O_RDWR)

virtual	~H5PartWrapperForPS ()

virtual void	readHeader ()

virtual void	readStep (PartBunchBase< double, 3 > *, h5_ssize_t firstParticle, h5_ssize_t lastParticle)

virtual void	writeHeader ()

virtual void	writeStep (PartBunchBase< double, 3 > *, const std::map< std::string, double > &additionalStepAttributes)

virtual bool	predecessorIsSameFlavour () const

void	stashPhaseSpaceEnvelope (EnvelopeBunch &bunch, Vector_t FDext[], double sposHead, double sposRef, double sposTail)

void	dumpStashedPhaseSpaceEnvelope ()

Public Member Functions inherited from H5PartWrapper
virtual	~H5PartWrapper ()

void	close ()

double	getLastPosition ()

void	storeCavityInformation ()

size_t	getNumParticles () const

Private Member Functions
void	readStepHeader (PartBunchBase< double, 3 > *)

void	readStepData (PartBunchBase< double, 3 > *, h5_ssize_t, h5_ssize_t)

void	writeStepHeader (PartBunchBase< double, 3 > *, const std::map< std::string, double > &)

void	writeStepData (PartBunchBase< double, 3 > *)

Private Attributes
std::vector< Vektor < h5_float64_t, 3 > >	stash_RefPartR

std::vector< Vektor < h5_float64_t, 3 > >	stash_RefPartP

std::vector< Vektor < h5_float64_t, 3 > >	stash_centroid

std::vector< Vektor < h5_float64_t, 3 > >	stash_geomvareps

std::vector< Vektor < h5_float64_t, 3 > >	stash_xsigma

std::vector< Vektor < h5_float64_t, 3 > >	stash_psigma

std::vector< Vektor < h5_float64_t, 3 > >	stash_vareps

std::vector< Vektor < h5_float64_t, 3 > >	stash_rmin

std::vector< Vektor < h5_float64_t, 3 > >	stash_rmax

std::vector< Vektor < h5_float64_t, 3 > >	stash_maxP

std::vector< Vektor < h5_float64_t, 3 > >	stash_minP

std::vector< Vektor < h5_float64_t, 3 > >	stash_Bhead

std::vector< Vektor < h5_float64_t, 3 > >	stash_Ehead

std::vector< Vektor < h5_float64_t, 3 > >	stash_Bref

std::vector< Vektor < h5_float64_t, 3 > >	stash_Eref

std::vector< Vektor < h5_float64_t, 3 > >	stash_Btail

std::vector< Vektor < h5_float64_t, 3 > >	stash_Etail

std::vector< h5_float64_t >	stash_actPos

std::vector< h5_float64_t >	stash_t

std::vector< h5_float64_t >	stash_meanEnergy

std::vector< h5_float64_t >	stash_mass

std::vector< h5_float64_t >	stash_charge

std::vector< h5_float64_t >	stash_sposHead

std::vector< h5_float64_t >	stash_sposRef

std::vector< h5_float64_t >	stash_sposTail

std::vector< size_t >	stash_nLoc

std::vector< size_t >	stash_nTot

Additional Inherited Members
Protected Member Functions inherited from H5PartWrapper
	H5PartWrapper (const std::string &fileName, h5_int32_t flags=H5_O_WRONLY)

	H5PartWrapper (const std::string &fileName, int restartStep, std::string sourceFile, h5_int32_t flags=H5_O_RDWR)

void	open (h5_int32_t flags)

void	copyFile (const std::string &sourceFile, int lastStep=-1, h5_int32_t flags=H5_O_WRONLY)

void	copyFileSystem (const std::string &sourceFile)

void	copyHeader (h5_file_t source)

void	copyStep (h5_file_t source, int step)

void	copyStepHeader (h5_file_t source)

void	copyStepData (h5_file_t source)

void	sendFailureMessage (bool failed, const std::string &where, const std::string &what)

void	receiveFailureMessage (int sourceNode, const std::string &where, const std::string &what)

Static Protected Member Functions inherited from H5PartWrapper
static void	reportOnError (h5_int64_t rc, const char *file, int line)

Protected Attributes inherited from H5PartWrapper
h5_file_t	file_m

std::string	fileName_m

std::string	predecessorOPALFlavour_m

h5_int64_t	numSteps_m

bool	startedFromExistingFile_m

Static Protected Attributes inherited from H5PartWrapper
static std::string	copyFilePrefix_m = ".copy"

Detailed Description

Definition at line 21 of file H5PartWrapperForPS.h.

Constructor & Destructor Documentation

H5PartWrapperForPS::H5PartWrapperForPS	(	const std::string &	fileName,
		h5_int32_t	flags = `H5_O_WRONLY`
	)

Definition at line 19 of file H5PartWrapperForPS.cpp.

H5PartWrapperForPS::H5PartWrapperForPS	(	const std::string &	fileName,
		int	restartStep,
		std::string	sourceFile,
		h5_int32_t	flags = `H5_O_RDWR`
	)

Definition at line 23 of file H5PartWrapperForPS.cpp.

References H5PartWrapper::file_m, OpalData::getInstance(), and OpalData::setRestartStep().

Here is the call graph for this function:

H5PartWrapperForPS::~H5PartWrapperForPS ( )

virtual

Definition at line 32 of file H5PartWrapperForPS.cpp.

Member Function Documentation

void H5PartWrapperForPS::dumpStashedPhaseSpaceEnvelope ( )

Set current record/time step.

Write statistical data.

Write particle mass and charge per particle. (Consider making these file attributes.)

Write normalized emittance.

Write geometric emittance.

Write bunch phase space.

Definition at line 468 of file H5PartWrapperForPS.cpp.

References H5PartWrapper::file_m, H5PartWrapper::numSteps_m, REPORTONERROR, stash_actPos, stash_Bhead, stash_Bref, stash_Btail, stash_centroid, stash_charge, stash_Ehead, stash_Eref, stash_Etail, stash_geomvareps, stash_mass, stash_maxP, stash_meanEnergy, stash_minP, stash_nLoc, stash_psigma, stash_RefPartP, stash_RefPartR, stash_rmax, stash_rmin, stash_sposHead, stash_sposRef, stash_sposTail, stash_t, stash_vareps, stash_xsigma, WRITEDATA, and WRITESTEPATTRIB.

bool H5PartWrapperForPS::predecessorIsSameFlavour ( ) const

inlinevirtual

Implements H5PartWrapper.

Definition at line 79 of file H5PartWrapperForPS.h.

References H5PartWrapper::predecessorOPALFlavour_m.

void H5PartWrapperForPS::readHeader ( )

virtual

Implements H5PartWrapper.

Definition at line 35 of file H5PartWrapperForPS.cpp.

References H5PartWrapper::file_m, OpalData::getInstance(), name, READFILEATTRIB, REPORTONERROR, OpalData::setGlobalPhaseShift(), and OpalData::setRestartDumpFreq().

Here is the call graph for this function:

void H5PartWrapperForPS::readStep	(	PartBunchBase< double, 3 > *	bunch,
		h5_ssize_t	firstParticle,
		h5_ssize_t	lastParticle
	)

virtual

Implements H5PartWrapper.

Definition at line 89 of file H5PartWrapperForPS.cpp.

References H5PartWrapper::file_m, readStepData(), readStepHeader(), and REPORTONERROR.

Here is the call graph for this function:

void H5PartWrapperForPS::readStepData	(	PartBunchBase< double, 3 > *	bunch,
		h5_ssize_t	firstParticle,
		h5_ssize_t	lastParticle
	)

private

Definition at line 104 of file H5PartWrapperForPS.cpp.

References H5PartWrapper::file_m, H5PartWrapper::getNumParticles(), Hypervolume::n, READDATA, REPORTONERROR, EnvelopeBunch::setBeta(), EnvelopeBunch::setPx(), EnvelopeBunch::setPx0(), EnvelopeBunch::setPy(), EnvelopeBunch::setPy0(), EnvelopeBunch::setX(), EnvelopeBunch::setX0(), EnvelopeBunch::setY(), EnvelopeBunch::setY0(), and EnvelopeBunch::setZ().

Referenced by readStep().

Here is the call graph for this function:

void H5PartWrapperForPS::readStepHeader ( PartBunchBase< double, 3 > * bunch )

private

Definition at line 98 of file H5PartWrapperForPS.cpp.

References H5PartWrapper::file_m, READSTEPATTRIB, and PartBunchBase< T, Dim >::setT().

Referenced by readStep().

Here is the call graph for this function:

void H5PartWrapperForPS::stashPhaseSpaceEnvelope	(	EnvelopeBunch &	bunch,
		Vector_t	FDext[],
		double	sposHead,
		double	sposRef,
		double	sposTail
	)

Calculate bunch statistical parameters etc. Put them in the right format for H5 file write.

Write particle mass and charge per particle. (Consider making these file attributes.)

Write bunch phase space.

Definition at line 396 of file H5PartWrapperForPS.cpp.

References EnvelopeBunch::calcBeamParameters(), Physics::e, EnvelopeBunch::emtn(), EnvelopeBunch::get_meanKineticEnergy(), EnvelopeBunch::get_norm_emit(), EnvelopeBunch::get_sPos(), EnvelopeBunch::getChargePerParticle(), EnvelopeBunch::getLocalNum(), PartBunchBase< T, Dim >::getM(), EnvelopeBunch::getT(), EnvelopeBunch::getTotalNum(), EnvelopeBunch::maxP(), EnvelopeBunch::maxX(), EnvelopeBunch::minP(), EnvelopeBunch::minX(), H5PartWrapper::numSteps_m, EnvelopeBunch::sigmap(), EnvelopeBunch::sigmax(), stash_actPos, stash_Bhead, stash_Bref, stash_Btail, stash_centroid, stash_charge, stash_Ehead, stash_Eref, stash_Etail, stash_geomvareps, stash_mass, stash_maxP, stash_meanEnergy, stash_minP, stash_nLoc, stash_nTot, stash_psigma, stash_RefPartP, stash_RefPartR, stash_rmax, stash_rmin, stash_sposHead, stash_sposRef, stash_sposTail, stash_t, stash_vareps, and stash_xsigma.

Here is the call graph for this function:

void H5PartWrapperForPS::writeHeader ( )

virtual

Write file dump frequency.

Write global phase change

Implements H5PartWrapper.

Definition at line 173 of file H5PartWrapperForPS.cpp.

References H5PartWrapper::file_m, Util::getGitRevision(), OpalData::getGlobalPhaseShift(), OpalData::getInstance(), OPAL_PROJECT_NAME, OPAL_PROJECT_VERSION, Options::psDumpFreq, WRITEFILEATTRIB, and WRITESTRINGFILEATTRIB.

Here is the call graph for this function:

void H5PartWrapperForPS::writeStep	(	PartBunchBase< double, 3 > *	bunch,
		const std::map< std::string, double > &	additionalStepAttributes
	)

virtual

Implements H5PartWrapper.

Definition at line 228 of file H5PartWrapperForPS.cpp.

References H5PartWrapper::close(), H5PartWrapper::open(), writeStepData(), and writeStepHeader().

Here is the call graph for this function:

void H5PartWrapperForPS::writeStepData ( PartBunchBase< double, 3 > * bunch )

private

Definition at line 341 of file H5PartWrapperForPS.cpp.

References H5PartWrapper::file_m, EnvelopeBunch::getBeta(), EnvelopeBunch::getLocalNum(), EnvelopeBunch::getPx(), EnvelopeBunch::getPx0(), EnvelopeBunch::getPy(), EnvelopeBunch::getPy0(), EnvelopeBunch::getPz(), EnvelopeBunch::getX(), EnvelopeBunch::getX0(), EnvelopeBunch::getY(), EnvelopeBunch::getY0(), EnvelopeBunch::getZ(), REPORTONERROR, and WRITEDATA.

Referenced by writeStep().

Here is the call graph for this function:

void H5PartWrapperForPS::writeStepHeader	(	PartBunchBase< double, 3 > *	bunch,
		const std::map< std::string, double > &	additionalStepAttributes
	)

private

Write particle mass and charge per particle. (Consider making these file attributes.)

Definition at line 237 of file H5PartWrapperForPS.cpp.

References Physics::c, EnvelopeBunch::calcBeamParameters(), endl(), Physics::epsilon_0, ERRORMSG, H5PartWrapper::file_m, PartBunchBase< T, Dim >::get_gamma(), PartBunchBase< T, Dim >::get_maxExtent(), EnvelopeBunch::get_meanKineticEnergy(), EnvelopeBunch::get_norm_emit(), PartBunchBase< T, Dim >::get_origin(), EnvelopeBunch::get_prms(), EnvelopeBunch::get_rrms(), EnvelopeBunch::get_sPos(), PartBunchBase< T, Dim >::getCharge(), PartBunchBase< T, Dim >::getM(), PartBunchBase< T, Dim >::getQ(), EnvelopeBunch::getT(), EnvelopeBunch::maxP(), EnvelopeBunch::minP(), H5PartWrapper::numSteps_m, Physics::pi, REPORTONERROR, WRITESTEPATTRIB, and WRITESTRINGSTEPATTRIB.

Referenced by writeStep().

Here is the call graph for this function:

Member Data Documentation

std::vector< h5_float64_t > H5PartWrapperForPS::stash_actPos

private

Definition at line 66 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_Bhead

private

Definition at line 60 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_Bref

private

Definition at line 62 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_Btail

private

Definition at line 64 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_centroid

private

Definition at line 51 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< h5_float64_t > H5PartWrapperForPS::stash_charge

private

Definition at line 70 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_Ehead

private

Definition at line 61 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_Eref

private

Definition at line 63 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_Etail

private

Definition at line 65 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_geomvareps

private

Definition at line 52 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< h5_float64_t > H5PartWrapperForPS::stash_mass

private

Definition at line 69 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_maxP

private

Definition at line 58 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< h5_float64_t > H5PartWrapperForPS::stash_meanEnergy

private

Definition at line 68 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_minP

private

Definition at line 59 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< size_t > H5PartWrapperForPS::stash_nLoc

private

Definition at line 74 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< size_t > H5PartWrapperForPS::stash_nTot

private

Definition at line 75 of file H5PartWrapperForPS.h.

Referenced by stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_psigma

private

Definition at line 54 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_RefPartP

private

Definition at line 50 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_RefPartR

private

Definition at line 49 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_rmax

private

Definition at line 57 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_rmin

private

Definition at line 56 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< h5_float64_t > H5PartWrapperForPS::stash_sposHead

private

Definition at line 71 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< h5_float64_t > H5PartWrapperForPS::stash_sposRef

private

Definition at line 72 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< h5_float64_t > H5PartWrapperForPS::stash_sposTail

private

Definition at line 73 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< h5_float64_t > H5PartWrapperForPS::stash_t

private

Definition at line 67 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_vareps

private

Definition at line 55 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

std::vector< Vektor<h5_float64_t, 3> > H5PartWrapperForPS::stash_xsigma

private

Definition at line 53 of file H5PartWrapperForPS.h.

Referenced by dumpStashedPhaseSpaceEnvelope(), and stashPhaseSpaceEnvelope().

The documentation for this class was generated from the following files:

src/Structure/H5PartWrapperForPS.h
src/Structure/H5PartWrapperForPS.cpp

Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation