#include <AmrYtWriter.h>

Inheritance diagram for AmrYtWriter:

Collaboration diagram for AmrYtWriter:

Public Member Functions
	AmrYtWriter (int step, int bin=0)

void	writeFields (const amr::AmrScalarFieldContainer_t &rho, const amr::AmrScalarFieldContainer_t &phi, const amr::AmrVectorFieldContainer_t &efield, const amr::AmrIntArray_t &refRatio, const amr::AmrGeomContainer_t &geom, const int &nLevel, const double &time, const double &scale)

void	writeBunch (const AmrPartBunch *bunch_p, const double &time, const double &gamma)

Public Member Functions inherited from AbstractAmrWriter
virtual	~AbstractAmrWriter ()

Private Member Functions
void	writeParticles_m (int level, std::ofstream &ofs, int fnum, amrex::Vector< int > &which, amrex::Vector< int > &count, amrex::Vector< long > &where, const AmrPartBunch *bunch_p, const double gamma) const

Private Attributes
std::string	dir_m
	directory where to write files More...

std::vector< std::string >	intData_m
	integer bunch data More...

std::vector< std::string >	realData_m
	real bunch data More...

Detailed Description

This concrete class writes output files that are readable by yt. The format can be read by the fork opal-yt that uses accelerator units instead of astrophysics units. The functions are copied from AMReX and modified to fit our needs.

Definition at line 20 of file AmrYtWriter.h.

Constructor & Destructor Documentation

AmrYtWriter::AmrYtWriter	(	int	step,
		int	bin = `0`
	)

Parameters

step	we write
bin	energy bin we write (multi-bunch simulation)

Definition at line 15 of file AmrYtWriter.cpp.

References Communicate::barrier(), IpplInfo::Comm, dir_m, Hypervolume::fs, OpalData::getInputBasename(), OpalData::getInstance(), intData_m, IpplInfo::myNode(), and realData_m.

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Member Function Documentation

void AmrYtWriter::writeBunch	(	const AmrPartBunch *	bunch_p,
		const double &	time,
		const double &	scale
	)

virtual

Parameters

bunch_p
time
scale	used for mapping

Implements AbstractAmrWriter.

Definition at line 273 of file AmrYtWriter.cpp.

References allreduce(), Communicate::barrier(), IpplInfo::Comm, dir_m, BoxLibLayout< T, Dim >::finestLevel(), AmrParticleBase< PLayout >::getAmrLayout(), AmrPartBunch::getAmrParticleBase(), PartBunchBase< T, Dim >::getLayout(), AmrParticleBase< PLayout >::getLocalNumPerLevel(), PartBunchBase< T, Dim >::getTotalNum(), Options::info, intData_m, max(), min(), IpplInfo::myNode(), realData_m, where(), and writeParticles_m().

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void AmrYtWriter::writeFields	(	const amr::AmrScalarFieldContainer_t &	rho,
		const amr::AmrScalarFieldContainer_t &	phi,
		const amr::AmrVectorFieldContainer_t &	efield,
		const amr::AmrIntArray_t &	refRatio,
		const amr::AmrGeomContainer_t &	geom,
		const int &	nLevel,
		const double &	time,
		const double &	scale
	)

virtual

Write yt files to the simulation subdirectory data/amr/yt. The data can be visualized using the python script pyOPALTools/amrPlots/visualize.py. Use the help to find out how to call the script.

Implements AbstractAmrWriter.

Definition at line 68 of file AmrYtWriter.cpp.

References Communicate::barrier(), IpplInfo::Comm, dir_m, IpplInfo::myNode(), and Hypervolume::n.

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void AmrYtWriter::writeParticles_m	(	int	level,
		std::ofstream &	ofs,
		int	fnum,
		amrex::Vector< int > &	which,
		amrex::Vector< int > &	count,
		amrex::Vector< long > &	where,
		const AmrPartBunch *	bunch_p,
		const double	gamma
	)		const