pyOPALTools
amr package
db package
jobhandler package
opal package
optPilot package
pc package
setup module
surrogate package
pyOPALTools
»
Index
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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R
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S
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W
_
__actual_file_load() (opal.datasets.SamplerDataset.SamplerDataset method)
__actual_parse() (opal.parser.OptimizerParser.OptimizerParser method)
__begin (opal.parser.sampler.SamplerParser attribute)
__clear_container() (opal.parser.OptimizerParser.OptimizerParser method)
__direction (opal.datasets.H5Dataset.H5Dataset attribute)
__dvar_bounds (opal.parser.sampler.SamplerParser attribute)
__dvar_names (opal.parser.OptimizerParser.OptimizerParser attribute)
__dvar_values (opal.parser.OptimizerParser.OptimizerParser attribute)
__dvars (opal.parser.sampler.SamplerParser attribute)
__end (opal.parser.sampler.SamplerParser attribute)
__find() (opal.visualization.OptimizerPlotter.OptimizerPlotter method)
__fix_bound_type() (opal.parser.sampler.SamplerParser method)
__hasLoaded() (opal.parser.OptimizerParser.OptimizerParser method)
__id (opal.parser.sampler.SamplerParser attribute)
__ids (opal.parser.OptimizerParser.OptimizerParser attribute)
__init__() (amr.AmrOpal.AmrOpal method)
(db.mldb.mldb method)
(jobhandler.submit.JobSubmitter method)
(opal.analysis.Statistics.Statistics method)
(opal.datasets.AmrDataset.AmrDataset method)
(opal.datasets.DatasetBase.DatasetBase method)
(opal.datasets.FieldDataset.FieldDataset method)
(opal.datasets.GridDataset.GridDataset method)
(opal.datasets.H5Dataset.H5Dataset method)
(opal.datasets.LBalDataset.LBalDataset method)
(opal.datasets.LossDataset.LossDataset method)
(opal.datasets.MemoryDataset.MemoryDataset method)
(opal.datasets.OptimizerDataset.OptimizerDataset method)
(opal.datasets.PeakDataset.PeakDataset method)
(opal.datasets.ProbeHistDataset.ProbeHistDataset method)
(opal.datasets.SamplerDataset.SamplerDataset method)
(opal.datasets.SDDSDatasetBase.SDDSDatasetBase method)
(opal.datasets.SolverDataset.SolverDataset method)
(opal.datasets.StatDataset.StatDataset method)
(opal.datasets.StdOpalOutputDataset.StdOpalOutputDataset method)
(opal.datasets.TimeDataset.TimeDataset method)
(opal.datasets.TrackOrbitDataset.TrackOrbitDataset method)
(opal.parser.FieldParser.FieldParser method)
(opal.parser.H5Error.H5AttributeError method)
(opal.parser.H5Error.H5DatasetError method)
(opal.parser.H5Error.H5Error method)
(opal.parser.H5Error.H5OverflowError method)
(opal.parser.H5Error.H5ParseError method)
(opal.parser.H5Parser.H5Parser method)
(opal.parser.HistogramParser.HistogramParser method)
(opal.parser.LatticeParser.LatticeParser method)
(opal.parser.LossParser.LossParser method)
(opal.parser.OptimizerParser.OptimizerParser method)
(opal.parser.PeakParser.PeakParser method)
(opal.parser.sampler.SamplerParser method)
(opal.parser.TimingParser.TimingParser method)
(opal.parser.TrackOrbitParser.TrackOrbitParser method)
(opal.visualization.AmrPlotter.AmrPlotter method)
(opal.visualization.BasePlotter.BasePlotter method)
(opal.visualization.GridPlotter.GridPlotter method)
(opal.visualization.H5Plotter.H5Plotter method)
(opal.visualization.MemoryPlotter.MemoryPlotter method)
(opal.visualization.OptimizerPlotter.OptimizerPlotter method)
(opal.visualization.PeakPlotter.PeakPlotter method)
(opal.visualization.ProbePlotter.ProbePlotter method)
(opal.visualization.ProfilingPlotter.ProfilingPlotter method)
(opal.visualization.SamplerPlotter.SamplerPlotter method)
(opal.visualization.SolverPlotter.SolverPlotter method)
(opal.visualization.StatPlotter.StatPlotter method)
(opal.visualization.StdOpalOutputPlotter.StdOpalOutputPlotter method)
(opal.visualization.TimingPlotter.TimingPlotter method)
(opal.visualization.TrackOrbitPlotter.TrackOrbitPlotter method)
(optPilot.Annotate.AnnoteFinder method)
(optPilot.Interpolator.Interpolator method)
(optPilot.visualize.OptData method)
(optPilot.visualize.Plotter method)
(pc.pce.pceEval method)
__label_mapper (opal.datasets.H5Dataset.H5Dataset attribute)
(opal.datasets.ProbeHistDataset.ProbeHistDataset attribute)
__load_file() (opal.datasets.SamplerDataset.SamplerDataset method)
__mostConsuming() (opal.visualization.TimingPlotter.TimingPlotter method)
__msg (opal.parser.H5Error.H5Error attribute)
__natural_sort() (opal.visualization.OptimizerPlotter.OptimizerPlotter method)
__nFiles (opal.datasets.SamplerDataset.SamplerDataset attribute)
__obj_names (opal.parser.OptimizerParser.OptimizerParser attribute)
__obj_values (opal.parser.OptimizerParser.OptimizerParser attribute)
__objs (opal.parser.sampler.SamplerParser attribute)
__pareto (opal.parser.OptimizerParser.OptimizerParser attribute)
__parse_version_2_0_0() (opal.parser.OptimizerParser.OptimizerParser method)
(opal.parser.sampler.SamplerParser method)
__parse_version_2_1_0() (opal.parser.OptimizerParser.OptimizerParser method)
(opal.parser.sampler.SamplerParser method)
__parser (opal.datasets.H5Dataset.H5Dataset attribute)
(opal.datasets.LossDataset.LossDataset attribute)
(opal.datasets.OptimizerDataset.OptimizerDataset attribute)
(opal.datasets.PeakDataset.PeakDataset attribute)
(opal.datasets.ProbeHistDataset.ProbeHistDataset attribute)
(opal.datasets.SamplerDataset.SamplerDataset attribute)
(opal.datasets.TimeDataset.TimeDataset attribute)
(opal.datasets.TrackOrbitDataset.TrackOrbitDataset attribute)
__postfix (opal.datasets.OptimizerDataset.OptimizerDataset attribute)
__removeNumber() (opal.parser.SDDSParser.SDDSParser method)
__reset_attributes() (opal.parser.OptimizerParser.OptimizerParser method)
__sort_list() (opal.visualization.OptimizerPlotter.OptimizerPlotter method)
__tag (opal.parser.sampler.SamplerParser attribute)
__unit_label_mapper (opal.datasets.H5Dataset.H5Dataset attribute)
(opal.datasets.LossDataset.LossDataset attribute)
(opal.datasets.TrackOrbitDataset.TrackOrbitDataset attribute)
__variable_mapper (opal.datasets.H5Dataset.H5Dataset attribute)
(opal.datasets.PeakDataset.PeakDataset attribute)
(opal.datasets.ProbeHistDataset.ProbeHistDataset attribute)
_append_dataset() (in module opal.opal)
_autolabel() (opal.visualization.SamplerPlotter.SamplerPlotter method)
_basename (opal.datasets.FieldDataset.FieldDataset attribute)
_check_header() (opal.parser.FieldParser.FieldParser method)
_check_step() (opal.parser.H5Parser.H5Parser method)
_checkVersion() (opal.parser.SDDSParser.SDDSParser method)
_column() (opal.parser.SDDSParser.SDDSParser method)
_columns (opal.parser.FieldParser.FieldParser attribute)
_count_files() (opal.datasets.FieldDataset.FieldDataset method)
_data (opal.parser.TimingParser.TimingParser attribute)
_data() (opal.parser.SDDSParser.SDDSParser method)
_description() (opal.parser.SDDSParser.SDDSParser method)
_df (opal.datasets.FieldDataset.FieldDataset attribute)
(opal.parser.FieldParser.FieldParser attribute)
_dim (opal.datasets.FieldDataset.FieldDataset attribute)
(opal.parser.FieldParser.FieldParser attribute)
_directory (opal.datasets.DatasetBase.DatasetBase attribute)
(opal.datasets.FieldDataset.FieldDataset attribute)
_exportAscii() (opal.parser.TimingParser.TimingParser method)
_exportPickle() (opal.parser.TimingParser.TimingParser method)
_fields (opal.datasets.FieldDataset.FieldDataset attribute)
_find_nearest() (opal.datasets.FieldDataset.FieldDataset method)
_fname (opal.datasets.DatasetBase.DatasetBase attribute)
_ftype (opal.datasets.DatasetBase.DatasetBase attribute)
_get_combined_filename() (opal.datasets.FieldDataset.FieldDataset method)
_get_type() (opal.parser.SDDSParser.SDDSParser method)
_halo_2d_ellipsoidal_beam() (opal.analysis.H5Statistics.H5Statistics method)
_hasVariable() (opal.parser.SDDSParser.SDDSParser method)
_info (opal.parser.HistogramParser.HistogramParser attribute)
_init_data_structure() (opal.parser.TimingParser.TimingParser method)
_label_mapper (opal.datasets.FieldDataset.FieldDataset attribute)
(opal.datasets.SDDSDatasetBase.SDDSDatasetBase attribute)
_load_pkl() (opal.parser.TimingParser.TimingParser method)
_load_step() (opal.datasets.FieldDataset.FieldDataset method)
_loaded_generation (opal.datasets.OptimizerDataset.OptimizerDataset attribute)
_loaded_optimizer (opal.datasets.OptimizerDataset.OptimizerDataset attribute)
_loaded_step (opal.datasets.FieldDataset.FieldDataset attribute)
_loadedGeneration (opal.datasets.OptimizerDataset.OptimizerDataset attribute)
_loadGeneration() (opal.datasets.OptimizerDataset.OptimizerDataset method)
_npadding (opal.datasets.FieldDataset.FieldDataset attribute)
_order() (opal.parser.TimingParser.TimingParser method)
_parameter() (opal.parser.SDDSParser.SDDSParser method)
_parse_header() (opal.parser.FieldParser.FieldParser method)
_parseHeader1_6() (opal.parser.SDDSParser.SDDSParser method)
_parseHeader1_9() (opal.parser.SDDSParser.SDDSParser method)
_parser (opal.datasets.FieldDataset.FieldDataset attribute)
(opal.datasets.SDDSDatasetBase.SDDSDatasetBase attribute)
_peaks (opal.parser.PeakParser.PeakParser attribute)
_select() (opal.analysis.H5Statistics.H5Statistics method)
_selectBunch() (opal.analysis.H5Statistics.H5Statistics method)
_stride (opal.datasets.FieldDataset.FieldDataset attribute)
(opal.parser.FieldParser.FieldParser attribute)
_unit_label_mapper (opal.datasets.SDDSDatasetBase.SDDSDatasetBase attribute)
_units (opal.datasets.FieldDataset.FieldDataset attribute)
_variable_mapper (opal.datasets.SDDSDatasetBase.SDDSDatasetBase attribute)
_version() (opal.parser.SDDSParser.SDDSParser method)
_write_run_file() (jobhandler.submit.JobSubmitter method)
_zero_padding() (opal.datasets.FieldDataset.FieldDataset method)
A
add_reset() (optPilot.visualize.Plotter method)
add_slider() (optPilot.visualize.Plotter method)
AMR (opal.datasets.filetype.FileType attribute)
amr.AmrOpal
module
AmrDataset (class in opal.datasets.AmrDataset)
AmrOpal (class in amr.AmrOpal)
AmrPlotter (class in opal.visualization.AmrPlotter)
AnnoteFinder (class in optPilot.Annotate)
B
BasePlotter (class in opal.visualization.BasePlotter)
begin() (opal.parser.sampler.SamplerParser property)
bootstrap_ci() (in module surrogate.bootstrap.bootstrap)
bootstrap_sobol() (in module surrogate.bootstrap.bootstrap)
bounds() (opal.datasets.OptimizerDataset.OptimizerDataset property)
(opal.datasets.SamplerDataset.SamplerDataset property)
(opal.parser.sampler.SamplerParser property)
build() (db.mldb.mldb method)
buildASCII() (db.mldb.mldb method)
buildBounded() (in module db.mldb)
buildFromSampler() (db.mldb.mldb method)
buildFromSDDS() (db.mldb.mldb method)
C
calcCenteringExtraction() (in module opal.analysis.cyclotron)
calcRFphases() (opal.analysis.StdOpalOutputAnalysis.StdOpalOutputAnalysis method)
calcTurnSeparation() (opal.analysis.TrackOrbitAnalysis.TrackOrbitAnalysis method)
check_file() (opal.parser.OptimizerParser.OptimizerParser method)
checkBounds() (in module db.mldb)
checkFileType() (opal.datasets.filetype.FileType method)
clear() (opal.parser.FieldParser.FieldParser method)
(opal.parser.H5Parser.H5Parser method)
(opal.parser.HistogramParser.HistogramParser method)
(opal.parser.LossParser.LossParser method)
(opal.parser.OptimizerParser.OptimizerParser method)
(opal.parser.PeakParser.PeakParser method)
(opal.parser.sampler.SamplerParser method)
(opal.parser.SDDSParser.SDDSParser method)
(opal.parser.TimingParser.TimingParser method)
(opal.parser.TrackOrbitParser.TrackOrbitParser method)
close() (opal.parser.H5Parser.H5Parser method)
collectStatFileData() (opal.parser.SDDSParser.SDDSParser method)
computeLimits() (in module optPilot.visualize)
(in module optPilot.visualize_pf)
D
dataframe() (opal.datasets.FieldDataset.FieldDataset property)
(opal.datasets.SDDSDatasetBase.SDDSDatasetBase property)
(opal.parser.FieldParser.FieldParser property)
(opal.parser.SDDSParser.SDDSParser property)
DatasetBase (class in opal.datasets.DatasetBase)
db.mldb
module
default() (in module opal.visualization.styles.default)
delete_repeats() (in module opal.analysis.pareto_fronts)
description() (opal.parser.TrackOrbitParser.TrackOrbitParser property)
design_variables() (opal.datasets.OptimizerDataset.OptimizerDataset property)
(opal.datasets.SamplerDataset.SamplerDataset property)
(opal.parser.sampler.SamplerParser property)
detect_peaks() (in module opal.analysis.cyclotron)
dimension() (opal.parser.FieldParser.FieldParser property)
distance() (in module optPilot.Annotate)
drawAnnote() (optPilot.Annotate.AnnoteFinder method)
drawSpecificAnnote() (optPilot.Annotate.AnnoteFinder method)
ds() (opal.datasets.DatasetBase.DatasetBase property)
E
end() (opal.parser.sampler.SamplerParser property)
eval_radial_momentum() (in module opal.analysis.cyclotron)
eval_radius() (in module opal.analysis.cyclotron)
evalPc() (pc.pce.pceEval method)
evaluate() (optPilot.Interpolator.Interpolator method)
extensionToFileType() (opal.datasets.filetype.FileType class method)
F
FIELD (opal.datasets.filetype.FileType attribute)
field() (opal.parser.FieldParser.FieldParser property)
FieldAnalysis (class in opal.analysis.FieldAnalysis)
FieldDataset (class in opal.datasets.FieldDataset)
FieldParser (class in opal.parser.FieldParser)
FieldPlotter (class in opal.visualization.FieldPlotter)
filename() (opal.datasets.DatasetBase.DatasetBase property)
FileType (class in opal.datasets.filetype)
filetype() (opal.datasets.DatasetBase.DatasetBase property)
find() (in module optPilot.visualize_parallel_coords)
(opal.analysis.OptimizerAnalysis.OptimizerAnalysis method)
find_beams() (opal.analysis.H5Statistics.H5Statistics method)
find_config_file() (in module opal.utilities.logger)
find_matches() (opal.analysis.SamplerStatistics.SamplerStatistics method)
find_minimum() (opal.analysis.OptimizerAnalysis.OptimizerAnalysis method)
findClosestIndex() (in module db.mldb)
G
gaussian_kde() (opal.analysis.H5Statistics.H5Statistics method)
(opal.analysis.Statistics.Statistics method)
get_all_data_db() (in module opal.analysis.pareto_fronts)
get_extensions() (opal.datasets.filetype.FileType class method)
get_mesh_spacing() (opal.datasets.FieldDataset.FieldDataset method)
get_parsers() (opal.datasets.filetype.FileType class method)
get_ray_along() (opal.datasets.AmrDataset.AmrDataset method)
get_unit_dictionary() (opal.parser.FieldParser.FieldParser method)
get_variables() (optPilot.visualize.OptData method)
getAllDvar() (db.mldb.mldb method)
getAllDvarData() (db.mldb.mldb method)
getAllInput() (opal.parser.OptimizerParser.OptimizerParser method)
getAllObj() (db.mldb.mldb method)
getAllObjData() (db.mldb.mldb method)
getAllOutput() (opal.parser.OptimizerParser.OptimizerParser method)
getAnchor() (optPilot.Annotate.AnnoteFinder method)
getBounds() (db.mldb.mldb method)
(opal.parser.OptimizerParser.OptimizerParser method)
getConstraints() (opal.parser.OptimizerParser.OptimizerParser method)
getData() (opal.datasets.DatasetBase.DatasetBase method)
(opal.datasets.FieldDataset.FieldDataset method)
(opal.datasets.H5Dataset.H5Dataset method)
(opal.datasets.LossDataset.LossDataset method)
(opal.datasets.OptimizerDataset.OptimizerDataset method)
(opal.datasets.PeakDataset.PeakDataset method)
(opal.datasets.ProbeHistDataset.ProbeHistDataset method)
(opal.datasets.SamplerDataset.SamplerDataset method)
(opal.datasets.SDDSDatasetBase.SDDSDatasetBase method)
(opal.datasets.StdOpalOutputDataset.StdOpalOutputDataset method)
(opal.datasets.TimeDataset.TimeDataset method)
(opal.datasets.TrackOrbitDataset.TrackOrbitDataset method)
getDataOfVariable() (opal.parser.HistogramParser.HistogramParser method)
(opal.parser.LossParser.LossParser method)
(opal.parser.PeakParser.PeakParser method)
(opal.parser.SDDSParser.SDDSParser method)
(opal.parser.TrackOrbitParser.TrackOrbitParser method)
getDescriptionOfVariable() (opal.parser.SDDSParser.SDDSParser method)
getDesignVariables() (opal.parser.OptimizerParser.OptimizerParser method)
getDvarsPD() (db.mldb.mldb method)
getDVarVec() (db.mldb.mldb method)
getGenerationBasename() (opal.datasets.OptimizerDataset.OptimizerDataset method)
getGlobalAttribute() (opal.parser.H5Parser.H5Parser method)
getGlobalAttributes() (opal.parser.H5Parser.H5Parser method)
getH5DataFrame() (opal.datasets.H5Dataset.H5Dataset method)
getIDs() (opal.parser.OptimizerParser.OptimizerParser method)
getIndexOfID() (opal.parser.OptimizerParser.OptimizerParser method)
getIndividual() (opal.parser.OptimizerParser.OptimizerParser method)
(opal.parser.sampler.SamplerParser method)
getIndividualWithID() (opal.parser.OptimizerParser.OptimizerParser method)
getLabel() (opal.datasets.DatasetBase.DatasetBase method)
(opal.datasets.FieldDataset.FieldDataset method)
(opal.datasets.H5Dataset.H5Dataset method)
(opal.datasets.LossDataset.LossDataset method)
(opal.datasets.OptimizerDataset.OptimizerDataset method)
(opal.datasets.PeakDataset.PeakDataset method)
(opal.datasets.ProbeHistDataset.ProbeHistDataset method)
(opal.datasets.SamplerDataset.SamplerDataset method)
(opal.datasets.SDDSDatasetBase.SDDSDatasetBase method)
(opal.datasets.StdOpalOutputDataset.StdOpalOutputDataset method)
(opal.datasets.TimeDataset.TimeDataset method)
(opal.datasets.TrackOrbitDataset.TrackOrbitDataset method)
getLabels() (opal.datasets.TimeDataset.TimeDataset method)
getLabelWithUnit() (opal.datasets.DatasetBase.DatasetBase method)
getMonitorDataFrame() (opal.datasets.H5Dataset.H5Dataset method)
getNSteps() (opal.parser.H5Parser.H5Parser method)
getNumberOfSamples() (db.mldb.mldb method)
getNumCores() (opal.datasets.GridDataset.GridDataset method)
getNumLevels() (opal.datasets.GridDataset.GridDataset method)
getNumOfGenerations() (opal.parser.OptimizerParser.OptimizerParser method)
getObjectives() (opal.parser.OptimizerParser.OptimizerParser method)
(opal.parser.sampler.SamplerParser method)
getObjVec() (db.mldb.mldb method)
getPCData() (in module pc.pce)
getProblemSize() (opal.parser.TimingParser.TimingParser method)
getQoiDvarPD() (db.mldb.mldb method)
getQoIsPD() (db.mldb.mldb method)
getRow() (opal.datasets.SDDSDatasetBase.SDDSDatasetBase method)
getSampleSize() (db.mldb.mldb method)
getSlice() (opal.datasets.FieldDataset.FieldDataset method)
getStepAttribute() (opal.parser.H5Parser.H5Parser method)
getStepAttributes() (opal.parser.H5Parser.H5Parser method)
getStepDataset() (opal.parser.H5Parser.H5Parser method)
getStepDatasets() (opal.parser.H5Parser.H5Parser method)
getTimes() (db.mldb.mldb method)
getTiming() (opal.parser.TimingParser.TimingParser method)
getType() (opal.parser.PeakParser.PeakParser method)
getUnit() (opal.datasets.DatasetBase.DatasetBase method)
(opal.datasets.FieldDataset.FieldDataset method)
(opal.datasets.H5Dataset.H5Dataset method)
(opal.datasets.LossDataset.LossDataset method)
(opal.datasets.OptimizerDataset.OptimizerDataset method)
(opal.datasets.PeakDataset.PeakDataset method)
(opal.datasets.ProbeHistDataset.ProbeHistDataset method)
(opal.datasets.SamplerDataset.SamplerDataset method)
(opal.datasets.SDDSDatasetBase.SDDSDatasetBase method)
(opal.datasets.StdOpalOutputDataset.StdOpalOutputDataset method)
(opal.datasets.TimeDataset.TimeDataset method)
(opal.datasets.TrackOrbitDataset.TrackOrbitDataset method)
getUnitOfVariable() (opal.parser.HistogramParser.HistogramParser method)
(opal.parser.LossParser.LossParser method)
(opal.parser.PeakParser.PeakParser method)
(opal.parser.SDDSParser.SDDSParser method)
(opal.parser.TrackOrbitParser.TrackOrbitParser method)
getVariableName() (opal.parser.PeakParser.PeakParser method)
getVariableNames() (opal.parser.LossParser.LossParser method)
(opal.parser.TrackOrbitParser.TrackOrbitParser method)
getVariables() (opal.datasets.SDDSDatasetBase.SDDSDatasetBase method)
(opal.parser.HistogramParser.HistogramParser method)
(opal.parser.SDDSParser.SDDSParser method)
getX() (optPilot.visualize.OptData method)
getXDim() (db.mldb.mldb method)
getXNames() (db.mldb.mldb method)
getXY() (in module optPilot.visualize)
getY() (optPilot.visualize.OptData method)
getYDim() (db.mldb.mldb method)
getYNames() (db.mldb.mldb method)
GRID (opal.datasets.filetype.FileType attribute)
GridDataset (class in opal.datasets.GridDataset)
GridPlotter (class in opal.visualization.GridPlotter)
H
H5 (opal.datasets.filetype.FileType attribute)
H5AttributeError
H5Dataset (class in opal.datasets.H5Dataset)
H5DatasetError
H5Error
H5OverflowError
H5ParseError
H5Parser (class in opal.parser.H5Parser)
H5Plotter (class in opal.visualization.H5Plotter)
H5Statistics (class in opal.analysis.H5Statistics)
halo_2d_ellipsoidal_beam() (opal.analysis.H5Statistics.H5Statistics method)
halo_continuous_beam() (opal.analysis.H5Statistics.H5Statistics method)
halo_ellipsoidal_beam() (opal.analysis.H5Statistics.H5Statistics method)
HIST (opal.datasets.filetype.FileType attribute)
histogram() (opal.analysis.H5Statistics.H5Statistics method)
(opal.analysis.Statistics.Statistics method)
HistogramParser (class in opal.parser.HistogramParser)
I
image() (opal.parser.FieldParser.FieldParser property)
improveName() (in module optPilot.visualize)
(in module optPilot.visualize_pf)
indices() (opal.datasets.FieldDataset.FieldDataset property)
(opal.parser.FieldParser.FieldParser property)
individuals() (opal.datasets.OptimizerDataset.OptimizerDataset method)
Interpolator (class in optPilot.Interpolator)
is_scalar() (opal.parser.FieldParser.FieldParser method)
isStepDataset() (opal.datasets.H5Dataset.H5Dataset method)
isVariable() (opal.parser.HistogramParser.HistogramParser method)
(opal.parser.LossParser.LossParser method)
(opal.parser.PeakParser.PeakParser method)
(opal.parser.TrackOrbitParser.TrackOrbitParser method)
J
jobhandler.submit
module
JobSubmitter (class in jobhandler.submit)
jupyter() (in module opal.visualization.styles.jupyter)
K
kurtosis() (opal.analysis.H5Statistics.H5Statistics method)
(opal.analysis.Statistics.Statistics method)
L
LatticeParser (class in opal.parser.LatticeParser)
LBAL (opal.datasets.filetype.FileType attribute)
LBalDataset (class in opal.datasets.LBalDataset)
line_plot() (amr.AmrOpal.AmrOpal method)
(opal.visualization.AmrPlotter.AmrPlotter method)
listifyData() (optPilot.Annotate.AnnoteFinder method)
load() (db.mldb.mldb method)
load_dataset() (in module opal.opal)
load_file() (amr.AmrOpal.AmrOpal method)
load_style() (in module opal.visualization.styles.load_style)
loaded_file() (opal.datasets.SamplerDataset.SamplerDataset property)
LOSS (opal.datasets.filetype.FileType attribute)
LossDataset (class in opal.datasets.LossDataset)
LossParser (class in opal.parser.LossParser)
M
main() (in module optPilot.visualize)
(in module optPilot.visualize_pf)
max() (opal.analysis.FieldAnalysis.FieldAnalysis method)
mean() (opal.analysis.H5Statistics.H5Statistics method)
(opal.analysis.Statistics.Statistics method)
MEM (opal.datasets.filetype.FileType attribute)
MemoryDataset (class in opal.datasets.MemoryDataset)
MemoryPlotter (class in opal.visualization.MemoryPlotter)
mldb (class in db.mldb)
module
amr.AmrOpal
db.mldb
jobhandler.submit
opal.analysis.cyclotron
opal.analysis.FieldAnalysis
opal.analysis.H5Statistics
opal.analysis.OptimizerAnalysis
opal.analysis.pareto_fronts
opal.analysis.SamplerStatistics
opal.analysis.Statistics
opal.analysis.StdOpalOutputAnalysis
opal.analysis.TrackOrbitAnalysis
opal.config
opal.datasets.AmrDataset
opal.datasets.DatasetBase
opal.datasets.FieldDataset
opal.datasets.filetype
opal.datasets.GridDataset
opal.datasets.H5Dataset
opal.datasets.LBalDataset
opal.datasets.LossDataset
opal.datasets.MemoryDataset
opal.datasets.OptimizerDataset
opal.datasets.PeakDataset
opal.datasets.ProbeHistDataset
opal.datasets.SamplerDataset
opal.datasets.SDDSDatasetBase
opal.datasets.SolverDataset
opal.datasets.StatDataset
opal.datasets.StdOpalOutputDataset
opal.datasets.TimeDataset
opal.datasets.TrackOrbitDataset
opal.opal
opal.parser.FieldParser
opal.parser.H5Error
opal.parser.H5Parser
opal.parser.HistogramParser
opal.parser.LatticeParser
opal.parser.LossParser
opal.parser.OptimizerParser
opal.parser.PeakParser
opal.parser.sampler
opal.parser.SDDSParser
opal.parser.TimingParser
opal.parser.TrackOrbitParser
opal.utilities.logger
opal.utilities.wrapper
opal.visualization.AmrPlotter
opal.visualization.BasePlotter
opal.visualization.FieldPlotter
opal.visualization.formatter
opal.visualization.GridPlotter
opal.visualization.H5Plotter
opal.visualization.MemoryPlotter
opal.visualization.OptimizerPlotter
opal.visualization.PeakPlotter
opal.visualization.ProbePlotter
opal.visualization.ProfilingPlotter
opal.visualization.SamplerPlotter
opal.visualization.SolverPlotter
opal.visualization.statistics.impl_plots
opal.visualization.StatPlotter
opal.visualization.StdOpalOutputPlotter
opal.visualization.styles.default
opal.visualization.styles.jupyter
opal.visualization.styles.load_style
opal.visualization.styles.poster
opal.visualization.TimingPlotter
opal.visualization.TrackOrbitPlotter
optPilot.Annotate
optPilot.Interpolator
optPilot.visualize
optPilot.visualize_parallel_coords
optPilot.visualize_pf
pc.pce
setup
surrogate.bootstrap.bootstrap
moment() (opal.analysis.H5Statistics.H5Statistics method)
(opal.analysis.Statistics.Statistics method)
N
names() (opal.datasets.FieldDataset.FieldDataset property)
natural_sort() (in module optPilot.visualize_parallel_coords)
new_label() (in module opal.utilities.wrapper)
NONE (opal.datasets.filetype.FileType attribute)
num_generations() (opal.datasets.OptimizerDataset.OptimizerDataset property)
num_optimizers() (opal.datasets.OptimizerDataset.OptimizerDataset property)
(opal.parser.OptimizerParser.OptimizerParser property)
num_samples() (opal.parser.sampler.SamplerParser property)
O
objectives() (opal.datasets.OptimizerDataset.OptimizerDataset property)
(opal.datasets.SamplerDataset.SamplerDataset property)
(opal.parser.sampler.SamplerParser property)
onpick() (in module optPilot.visualize_pf)
opal.analysis.cyclotron
module
opal.analysis.FieldAnalysis
module
opal.analysis.H5Statistics
module
opal.analysis.OptimizerAnalysis
module
opal.analysis.pareto_fronts
module
opal.analysis.SamplerStatistics
module
opal.analysis.Statistics
module
opal.analysis.StdOpalOutputAnalysis
module
opal.analysis.TrackOrbitAnalysis
module
opal.config
module
opal.datasets.AmrDataset
module
opal.datasets.DatasetBase
module
opal.datasets.FieldDataset
module
opal.datasets.filetype
module
opal.datasets.GridDataset
module
opal.datasets.H5Dataset
module
opal.datasets.LBalDataset
module
opal.datasets.LossDataset
module
opal.datasets.MemoryDataset
module
opal.datasets.OptimizerDataset
module
opal.datasets.PeakDataset
module
opal.datasets.ProbeHistDataset
module
opal.datasets.SamplerDataset
module
opal.datasets.SDDSDatasetBase
module
opal.datasets.SolverDataset
module
opal.datasets.StatDataset
module
opal.datasets.StdOpalOutputDataset
module
opal.datasets.TimeDataset
module
opal.datasets.TrackOrbitDataset
module
opal.opal
module
opal.parser.FieldParser
module
opal.parser.H5Error
module
opal.parser.H5Parser
module
opal.parser.HistogramParser
module
opal.parser.LatticeParser
module
opal.parser.LossParser
module
opal.parser.OptimizerParser
module
opal.parser.PeakParser
module
opal.parser.sampler
module
opal.parser.SDDSParser
module
opal.parser.TimingParser
module
opal.parser.TrackOrbitParser
module
opal.utilities.logger
module
opal.utilities.wrapper
module
opal.visualization.AmrPlotter
module
opal.visualization.BasePlotter
module
opal.visualization.FieldPlotter
module
opal.visualization.formatter
module
opal.visualization.GridPlotter
module
opal.visualization.H5Plotter
module
opal.visualization.MemoryPlotter
module
opal.visualization.OptimizerPlotter
module
opal.visualization.PeakPlotter
module
opal.visualization.ProbePlotter
module
opal.visualization.ProfilingPlotter
module
opal.visualization.SamplerPlotter
module
opal.visualization.SolverPlotter
module
opal.visualization.statistics.impl_plots
module
opal.visualization.StatPlotter
module
opal.visualization.StdOpalOutputPlotter
module
opal.visualization.styles.default
module
opal.visualization.styles.jupyter
module
opal.visualization.styles.load_style
module
opal.visualization.styles.poster
module
opal.visualization.TimingPlotter
module
opal.visualization.TrackOrbitPlotter
module
OptData (class in optPilot.visualize)
OPTIMIZER (opal.datasets.filetype.FileType attribute)
OptimizerAnalysis (class in opal.analysis.OptimizerAnalysis)
OptimizerDataset (class in opal.datasets.OptimizerDataset)
OptimizerParser (class in opal.parser.OptimizerParser)
OptimizerPlotter (class in opal.visualization.OptimizerPlotter)
optPilot.Annotate
module
optPilot.Interpolator
module
optPilot.visualize
module
optPilot.visualize_parallel_coords
module
optPilot.visualize_pf
module
OUTPUT (opal.datasets.filetype.FileType attribute)
P
pareto_pts() (in module opal.analysis.pareto_fronts)
parse() (opal.parser.FieldParser.FieldParser method)
(opal.parser.H5Parser.H5Parser method)
(opal.parser.HistogramParser.HistogramParser method)
(opal.parser.LossParser.LossParser method)
(opal.parser.OptimizerParser.OptimizerParser method)
(opal.parser.PeakParser.PeakParser method)
(opal.parser.sampler.SamplerParser method)
(opal.parser.SDDSParser.SDDSParser method)
(opal.parser.TimingParser.TimingParser method)
(opal.parser.TrackOrbitParser.TrackOrbitParser method)
particle_phase_space_plot() (amr.AmrOpal.AmrOpal method)
(opal.visualization.AmrPlotter.AmrPlotter method)
particle_plot() (amr.AmrOpal.AmrOpal method)
(opal.visualization.AmrPlotter.AmrPlotter method)
pc.pce
module
pceEval (class in pc.pce)
PEAK (opal.datasets.filetype.FileType attribute)
PeakDataset (class in opal.datasets.PeakDataset)
PeakParser (class in opal.parser.PeakParser)
PeakPlotter (class in opal.visualization.PeakPlotter)
plot() (in module optPilot.visualize_pf)
(opal.parser.LatticeParser.LatticeParser method)
(optPilot.visualize.Plotter method)
plot_auto_correlation() (opal.visualization.SamplerPlotter.SamplerPlotter method)
plot_beta_beat() (opal.visualization.TrackOrbitPlotter.TrackOrbitPlotter method)
plot_centering() (opal.visualization.TrackOrbitPlotter.TrackOrbitPlotter method)
plot_classification() (in module opal.visualization.statistics.impl_plots)
(opal.visualization.H5Plotter.H5Plotter method)
plot_density() (in module opal.visualization.statistics.impl_plots)
(opal.visualization.H5Plotter.H5Plotter method)
plot_density_scipy() (opal.visualization.H5Plotter.H5Plotter method)
plot_dvar_evolution() (opal.visualization.OptimizerPlotter.OptimizerPlotter method)
plot_efficiency() (opal.visualization.TimingPlotter.TimingPlotter method)
plot_energy() (opal.visualization.TrackOrbitPlotter.TrackOrbitPlotter method)
plot_energy_gain() (opal.visualization.TrackOrbitPlotter.TrackOrbitPlotter method)
plot_envelope() (opal.visualization.StatPlotter.StatPlotter method)
plot_grid_histogram() (opal.visualization.GridPlotter.GridPlotter method)
plot_grids_per_level() (opal.visualization.GridPlotter.GridPlotter method)
plot_histogram() (opal.visualization.H5Plotter.H5Plotter method)
plot_individual_bounds() (opal.visualization.OptimizerPlotter.OptimizerPlotter method)
plot_joint() (in module opal.visualization.statistics.impl_plots)
(opal.visualization.H5Plotter.H5Plotter method)
plot_lbal_boxplot() (opal.visualization.ProfilingPlotter.ProfilingPlotter method)
plot_lbal_histogram() (opal.visualization.ProfilingPlotter.ProfilingPlotter method)
plot_lbal_summary() (opal.visualization.ProfilingPlotter.ProfilingPlotter method)
plot_line() (opal.visualization.FieldPlotter.FieldPlotter method)
plot_memory_boxplot() (opal.visualization.MemoryPlotter.MemoryPlotter method)
plot_memory_summary() (opal.visualization.MemoryPlotter.MemoryPlotter method)
plot_objective_evolution() (opal.visualization.OptimizerPlotter.OptimizerPlotter method)
plot_objectives() (opal.visualization.OptimizerPlotter.OptimizerPlotter method)
plot_orbits() (opal.visualization.TrackOrbitPlotter.TrackOrbitPlotter method)
plot_parallel_coordinates() (opal.visualization.OptimizerPlotter.OptimizerPlotter method)
plot_parcoords() (in module optPilot.visualize_parallel_coords)
plot_pareto_front() (opal.visualization.OptimizerPlotter.OptimizerPlotter method)
plot_peak_difference() (opal.visualization.PeakPlotter.PeakPlotter method)
plot_phase_space() (opal.visualization.H5Plotter.H5Plotter method)
plot_pie_chart() (opal.visualization.TimingPlotter.TimingPlotter method)
plot_probe_histogram() (opal.visualization.ProbePlotter.ProbePlotter method)
plot_profile1D() (opal.visualization.StatPlotter.StatPlotter method)
plot_projection() (opal.visualization.FieldPlotter.FieldPlotter method)
plot_RF_phases() (opal.visualization.StdOpalOutputPlotter.StdOpalOutputPlotter method)
plot_sample_input_statistics() (opal.visualization.SamplerPlotter.SamplerPlotter method)
plot_slice() (opal.visualization.FieldPlotter.FieldPlotter method)
plot_solver_histogram() (opal.visualization.SolverPlotter.SolverPlotter method)
plot_speedup() (opal.visualization.TimingPlotter.TimingPlotter method)
plot_time_scaling() (opal.visualization.TimingPlotter.TimingPlotter method)
plot_time_summary() (opal.visualization.TimingPlotter.TimingPlotter method)
plot_total_memory() (opal.visualization.MemoryPlotter.MemoryPlotter method)
plot_training_vs_validation() (opal.visualization.SamplerPlotter.SamplerPlotter method)
plot_turn_separation() (opal.visualization.TrackOrbitPlotter.TrackOrbitPlotter method)
plot_turns() (opal.visualization.TrackOrbitPlotter.TrackOrbitPlotter method)
plot_variability() (opal.visualization.SamplerPlotter.SamplerPlotter method)
Plotter (class in optPilot.visualize)
positions() (opal.datasets.FieldDataset.FieldDataset property)
(opal.parser.FieldParser.FieldParser property)
poster() (in module opal.visualization.styles.poster)
print_individual() (opal.analysis.OptimizerAnalysis.OptimizerAnalysis method)
printOverview() (db.mldb.mldb method)
ProbeHistDataset (class in opal.datasets.ProbeHistDataset)
ProbePlotter (class in opal.visualization.ProbePlotter)
ProfilingPlotter (class in opal.visualization.ProfilingPlotter)
projected_emittance() (opal.analysis.H5Statistics.H5Statistics method)
projection_plot() (amr.AmrOpal.AmrOpal method)
(opal.visualization.AmrPlotter.AmrPlotter method)
properties() (opal.parser.TimingParser.TimingParser property)
R
radial_halo_2d_ellipsoidal_beam() (opal.analysis.H5Statistics.H5Statistics method)
radial_halo_ellipsoidal_beam() (opal.analysis.H5Statistics.H5Statistics method)
radial_moment() (opal.analysis.H5Statistics.H5Statistics method)
radial_projected_emittance() (opal.analysis.H5Statistics.H5Statistics method)
read() (opal.parser.TimingParser.TimingParser method)
read_ippl_timing() (opal.parser.TimingParser.TimingParser method)
read_output_file() (opal.parser.TimingParser.TimingParser method)
readDAT_0() (in module optPilot.visualize_pf)
readData() (in module optPilot.visualize_pf)
(optPilot.visualize.OptData method)
readGeneration() (opal.parser.OptimizerParser.OptimizerParser method)
readInitialData() (optPilot.visualize.OptData method)
readJSONData() (in module optPilot.visualize)
(in module optPilot.visualize_pf)
real_ds() (opal.datasets.AmrDataset.AmrDataset property)
rotate() (opal.analysis.H5Statistics.H5Statistics method)
S
SAMPLER (opal.datasets.filetype.FileType attribute)
SamplerDataset (class in opal.datasets.SamplerDataset)
SamplerParser (class in opal.parser.sampler)
SamplerPlotter (class in opal.visualization.SamplerPlotter)
SamplerStatistics (class in opal.analysis.SamplerStatistics)
saveVideo() (in module optPilot.visualize_pf)
scaleData() (in module opal.analysis.pareto_fronts)
SDDSDatasetBase (class in opal.datasets.SDDSDatasetBase)
SDDSParser (class in opal.parser.SDDSParser)
selectData() (opal.analysis.H5Statistics.H5Statistics method)
setup
module
setupPlot() (in module optPilot.visualize_pf)
(optPilot.visualize.Plotter method)
size() (opal.datasets.DatasetBase.DatasetBase property)
(opal.datasets.H5Dataset.H5Dataset property)
(opal.datasets.LossDataset.LossDataset property)
(opal.datasets.OptimizerDataset.OptimizerDataset property)
(opal.datasets.PeakDataset.PeakDataset property)
(opal.datasets.ProbeHistDataset.ProbeHistDataset property)
(opal.datasets.SamplerDataset.SamplerDataset property)
(opal.datasets.SDDSDatasetBase.SDDSDatasetBase property)
(opal.datasets.StdOpalOutputDataset.StdOpalOutputDataset property)
(opal.datasets.TimeDataset.TimeDataset property)
(opal.datasets.TrackOrbitDataset.TrackOrbitDataset property)
(opal.parser.HistogramParser.HistogramParser property)
(opal.parser.LossParser.LossParser property)
(opal.parser.SDDSParser.SDDSParser property)
(opal.parser.TrackOrbitParser.TrackOrbitParser property)
skew() (opal.analysis.H5Statistics.H5Statistics method)
(opal.analysis.Statistics.Statistics method)
slice_plot() (amr.AmrOpal.AmrOpal method)
(opal.visualization.AmrPlotter.AmrPlotter method)
SMB (opal.datasets.filetype.FileType attribute)
SOLVER (opal.datasets.filetype.FileType attribute)
SolverDataset (class in opal.datasets.SolverDataset)
SolverPlotter (class in opal.visualization.SolverPlotter)
sort_list() (in module optPilot.visualize_parallel_coords)
STAT (opal.datasets.filetype.FileType attribute)
StatDataset (class in opal.datasets.StatDataset)
Statistics (class in opal.analysis.Statistics)
StatPlotter (class in opal.visualization.StatPlotter)
StdOpalOutputAnalysis (class in opal.analysis.StdOpalOutputAnalysis)
StdOpalOutputDataset (class in opal.datasets.StdOpalOutputDataset)
StdOpalOutputPlotter (class in opal.visualization.StdOpalOutputPlotter)
stride() (opal.datasets.FieldDataset.FieldDataset property)
(opal.parser.FieldParser.FieldParser property)
strToFloat() (in module db.mldb)
submit() (jobhandler.submit.JobSubmitter method)
substring_after() (in module db.mldb)
substring_before() (in module db.mldb)
sum() (opal.analysis.FieldAnalysis.FieldAnalysis method)
surrogate.bootstrap.bootstrap
module
T
TimeDataset (class in opal.datasets.TimeDataset)
TIMING (opal.datasets.filetype.FileType attribute)
TimingParser (class in opal.parser.TimingParser)
TimingPlotter (class in opal.visualization.TimingPlotter)
total_charge() (opal.analysis.FieldAnalysis.FieldAnalysis method)
TRACK_ORBIT (opal.datasets.filetype.FileType attribute)
TrackOrbitAnalysis (class in opal.analysis.TrackOrbitAnalysis)
TrackOrbitDataset (class in opal.datasets.TrackOrbitDataset)
TrackOrbitParser (class in opal.parser.TrackOrbitParser)
TrackOrbitPlotter (class in opal.visualization.TrackOrbitPlotter)
train() (optPilot.Interpolator.Interpolator method)
W
wrapper() (in module opal.utilities.wrapper)
write() (opal.parser.TimingParser.TimingParser method)
writeDB() (db.mldb.mldb method)